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Sample GSM301735 Query DataSets for GSM301735
Status Public on Aug 11, 2008
Title IDDM 23 A.txt~typeI
Sample type RNA
 
Source name IDDM 23 A, typeI
Organism Homo sapiens
Characteristics Age: 6 yrs, when sample taken.
Gender: M
Ethnicity: Not Hispanic or Latino
Race: Selected More than One Race
Illness: Type 1 Diabetes
Extracted molecule total RNA
Extraction protocol RNeasy Mini
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
 
Hybridization protocol EukGE-WS2v5
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 System.
Description A male subject diagnosed with Type 1 Diabetes where age 6 yrs, when sample taken.
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
 
Submission date Jun 30, 2008
Last update date Aug 11, 2008
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL96
Series (2)
GSE11907 A Modular Analysis Framework for Blood Genomics Studies: Application to Systemic Lupus Erythematosus
GSE11908 Construction of a modular analysis framework for blood Genomics Studies

Data table header descriptions
ID_REF Affymetrix probe set identifier
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 479.2 P
AFFX-BioB-M_at 784.4 P
AFFX-BioB-3_at 421.8 P
AFFX-BioC-5_at 1621.9 P
AFFX-BioC-3_at 1801.9 P
AFFX-BioDn-5_at 3138.4 P
AFFX-BioDn-3_at 7740.4 P
AFFX-CreX-5_at 14802.4 P
AFFX-CreX-3_at 22381.8 P
AFFX-DapX-5_at 34.2 A
AFFX-DapX-M_at 29.5 A
AFFX-DapX-3_at 24.7 A
AFFX-LysX-5_at 3.8 A
AFFX-LysX-M_at 39.1 A
AFFX-LysX-3_at 20.6 A
AFFX-PheX-5_at 1.3 A
AFFX-PheX-M_at 2.9 A
AFFX-PheX-3_at 49.9 A
AFFX-ThrX-5_at 22.1 A
AFFX-ThrX-M_at 31.3 A

Total number of rows: 22283

Table truncated, full table size 400 Kbytes.




Supplementary file Size Download File type/resource
GSM301735.CEL.gz 2.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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