|
| Status |
Public on Aug 11, 2008 |
| Title |
003-187-005_ACC-015.txt~melanoma-AB-chip |
| Sample type |
RNA |
| |
|
| Source name |
003-187-005_ACC-015, melanoma-AB-chip
|
| Organism |
Homo sapiens |
| Characteristics |
Age: 66 yrs, when sample taken.
Gender: M
Ethnicity: Not Hispanic or Latino
Race: White
Illness: Melanoma M1b
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNeasy Mini
|
| Label |
biotin
|
| Label protocol |
Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
|
| |
|
| Hybridization protocol |
EukGE-WS2
|
| Scan protocol |
GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 System.
|
| Description |
A male subject diagnosed with Melanoma M1b where age 66 yrs, when sample taken.
CEL file not available for this chip (corrupted)
|
| Data processing |
The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
|
| |
|
| Submission date |
Jun 30, 2008 |
| Last update date |
Aug 11, 2008 |
| Contact name |
Damien Chaussabel |
| E-mail(s) |
[email protected]
|
| Organization name |
Baylor Institute for Immunology Research
|
| Street address |
3434 Live Oak
|
| City |
Dallas |
| State/province |
TX |
| ZIP/Postal code |
75204 |
| Country |
USA |
| |
|
| Platform ID |
GPL96 |
| Series (2) |
| GSE11907 |
A Modular Analysis Framework for Blood Genomics Studies: Application to Systemic Lupus Erythematosus |
| GSE11908 |
Construction of a modular analysis framework for blood Genomics Studies |
|
