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Sample GSM301823 Query DataSets for GSM301823
Status Public on Aug 11, 2008
Title INF057B.txt~Ecoli
Sample type RNA
 
Source name INF057B, Ecoli
Organism Homo sapiens
Characteristics Age: 3 mths, when sample taken.
Gender: F
Ethnicity: Not Hispanic or Latino
Race: Black or African American
Illness: (Illness not reported).
Extracted molecule total RNA
Extraction protocol RNeasy Mini
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
 
Hybridization protocol EukGE-WS2v4
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 System.
Description A female subject whose illness is not reported where age 3 mths, when sample taken.
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
 
Submission date Jun 30, 2008
Last update date Aug 11, 2008
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL97
Series (2)
GSE11907 A Modular Analysis Framework for Blood Genomics Studies: Application to Systemic Lupus Erythematosus
GSE11908 Construction of a modular analysis framework for blood Genomics Studies

Data table header descriptions
ID_REF Affymetrix probe set identifier
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 822.9 P
AFFX-BioB-M_at 2566.3 P
AFFX-BioB-3_at 1104.9 P
AFFX-BioC-5_at 3297.2 P
AFFX-BioC-3_at 2769.4 P
AFFX-BioDn-5_at 2925.6 P
AFFX-BioDn-3_at 22088.6 P
AFFX-CreX-5_at 39444 P
AFFX-CreX-3_at 60671.6 P
AFFX-DapX-5_at 78.2 A
AFFX-DapX-M_at 48.4 A
AFFX-DapX-3_at 18.5 A
AFFX-LysX-5_at 11.9 A
AFFX-LysX-M_at 76 A
AFFX-LysX-3_at 84.2 A
AFFX-PheX-5_at 14.4 A
AFFX-PheX-M_at 17.2 A
AFFX-PheX-3_at 76.3 A
AFFX-ThrX-5_at 46.2 A
AFFX-ThrX-M_at 31 A

Total number of rows: 22645

Table truncated, full table size 398 Kbytes.




Supplementary file Size Download File type/resource
GSM301823.CEL.gz 2.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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