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Sample GSM301843 Query DataSets for GSM301843
Status Public on Aug 11, 2008
Title INF088B.txt~STAPH
Sample type RNA
 
Source name INF088B, STAPH
Organism Homo sapiens
Characteristics Age: 11 mths, when sample taken.
Gender: M
Ethnicity: Hispanic or Latino
Race: (Race Not Reported)
Illness: Osteomyelitis/bacteremia
Extracted molecule total RNA
Extraction protocol RNeasy Mini
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
 
Hybridization protocol EukGE-WS2
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000 System.
Description A male subject diagnosed with Osteomyelitis/bacteremia where age 11 mths, when sample taken.
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 500.
 
Submission date Jun 30, 2008
Last update date Aug 11, 2008
Contact name Damien Chaussabel
E-mail(s) [email protected]
Organization name Baylor Institute for Immunology Research
Street address 3434 Live Oak
City Dallas
State/province TX
ZIP/Postal code 75204
Country USA
 
Platform ID GPL97
Series (2)
GSE11907 A Modular Analysis Framework for Blood Genomics Studies: Application to Systemic Lupus Erythematosus
GSE11908 Construction of a modular analysis framework for blood Genomics Studies

Data table header descriptions
ID_REF Affymetrix probe set identifier
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
ID_REF VALUE ABS_CALL
AFFX-BioB-5_at 1202.8 P
AFFX-BioB-M_at 2605.8 P
AFFX-BioB-3_at 942.5 P
AFFX-BioC-5_at 3071.4 P
AFFX-BioC-3_at 2634.2 P
AFFX-BioDn-5_at 2614.9 P
AFFX-BioDn-3_at 19076 P
AFFX-CreX-5_at 28588.3 P
AFFX-CreX-3_at 47879.9 P
AFFX-DapX-5_at 131.6 A
AFFX-DapX-M_at 180.2 A
AFFX-DapX-3_at 30.8 A
AFFX-LysX-5_at 57.5 A
AFFX-LysX-M_at 57.6 A
AFFX-LysX-3_at 66.8 A
AFFX-PheX-5_at 16.9 A
AFFX-PheX-M_at 17.3 A
AFFX-PheX-3_at 211.9 A
AFFX-ThrX-5_at 31.3 A
AFFX-ThrX-M_at 17.8 A

Total number of rows: 22645

Table truncated, full table size 399 Kbytes.




Supplementary file Size Download File type/resource
GSM301843.CEL.gz 3.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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