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Sample GSM3021 Query DataSets for GSM3021
Status Public on Nov 25, 2002
Title mex67-5TS_v_Mex67WT 061401 slide 3 scan 3a
Sample type RNA
 
Channel 1
Source name total RNA from mex67-5 temperature-sensitive cells at 37°C
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name total RNA from Mex67 wildtype cells at 37°C
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description Comparison of cDNA from RNA of mex67-5 temperature-sensitive mutant to RNA from Mex67 wildtype strain both at the non-permissive temperature of 37°C
 
Submission date Nov 25, 2002
Last update date Oct 28, 2005
Contact name Haley Hieronymus
E-mail(s) [email protected]
Phone 617-632-5105
Organization name Harvard Medical School and Dana-Farber Cancer Institute
Department
Lab Pamela A. Silver
Street address 1 Jimmy Fund Way SM922
City Boston
State/province MA
ZIP/Postal code 02445
Country USA
 
Platform ID GPL220
Series (1)
GSE103 total RNA from mex67-6 at 37C vs. Mex67 WT at 37C (mex67-5TS_v_Mex67WT)

Data table header descriptions
ID_REF
CH1_MEAN Sample 1 Mean Intensity
CH1_BKD_MEDIAN Sample 1 Median Background Level; used as CH1 background for ratio calculation
CH1_BKD_MEAN Sample 1 Mean Background Level
CH2_MEAN Sample 2 Mean Intensity
CH2_BKD_MEDIAN Sample 2 Median Background Level; used as CH2 background for ratio calculation
CH2_BKD_MEAN Sample 2 Mean Background Level
CH1_AREA Sample 1 area
CH1_BKD_AREA Sample 1 background area
CH2_AREA Sample 2 area
CH2_BKD_AREA Sample 2 background area
VALUE intermediate log ratio before taking the mean of duplicate ORFS, etc.; see methods and website for full treatment

Data table
ID_REF CH1_MEAN CH1_BKD_MEDIAN CH1_BKD_MEAN CH2_MEAN CH2_BKD_MEDIAN CH2_BKD_MEAN CH1_AREA CH1_BKD_AREA CH2_AREA CH2_BKD_AREA VALUE
1 2976 913 1214 28775 7499 9075 208 1141 208 1141 -1.013390754
2 18467 1053 1337 217662.5 9437 11262.5 256 1043 256 1043 -1.0825093
3 562 595 675 6025 6712 8075 208 1100 208 1100 -0.850591993
4 847 580 615 7050 6737 6962.5 208 1065 208 1065 -1.003350804
5 899 772 1093 9312.5 8074 10200 208 1174 208 1174 -0.975168379
6 5314 1074 1959 61800 8712 11600 208 1107 208 1107 -1.067028724
7 16286 889 1515 53312.5 8462 9125 177 1112 177 1112 -0.467707129
8 1167 655 739 13850 9374 9637.5 208 1028 208 1028 -1.18251118
9 845 751 1060 11037.5 10712 13175 208 1102 208 1102 -1.129279986
10 5484 788 1100 21475 11349 13712.5 208 1195 208 1195 -0.574105247
11 3287 615 709 32275 9899 10225 192 1154 192 1154 -1.030863818
12 570 533 579 8912.5 8262 8512.5 208 1075 208 1075 -1.25348879
13 822 640 743 9875 8024 8350 208 1142 208 1142 -1.471381877
14 12183 761 868 64450 8274 8525 225 1151 225 1151 -0.727502236
15 1124 838 1040 11287.5 8612 9387.5 225 1135 225 1135 -1.261084066
16 6221 1407 2030 51075 11362 18737.5 208 1148 208 1148 -0.986699184
17 11051 1412 2006 282150 16249 23425 293 1044 293 1044 -1.460228347
18 762 751 927 12150 9449 12925 274 918 274 918 -1.188281385
19 2060 671 761 21437.5 7274 7550 192 1037 192 1037 -1.053211237
20 8244 552 618 30687.5 6949 7162.5 216 1300 216 1300 -0.467598102

Total number of rows: 7680

Table truncated, full table size 502 Kbytes.




Supplementary data files not provided
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