|
| Status |
Public on Apr 19, 2018 |
| Title |
Runx3 KO Day 5 KLRG1lo replicate 1 |
| Sample type |
SRA |
| |
|
| Source name |
Sorted Day 5 Post LCMV-Arm Infection P14 cells
|
| Organism |
Mus musculus |
| Characteristics |
strain: C57BL/6
genotype/variation: Runx3fl/fl
cell type: Flow Sorted KLRG1- CD8+ T cells
|
| Extracted molecule |
total RNA |
| Extraction protocol |
oligo(dT) priming and SMART-Seq v5 ultra low input RNA KIT
Strand specific paired end libraries were made using the TruSeq stranded total RNA kit. Samples were DNAseI treated.
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NextSeq 500 |
| |
|
| Description |
RNA-Seq_invivo
|
| Data processing |
Star Aligner
HT-Seq Count
DESEQ2
Genome_build: UCSC mm10
Supplementary_files_format_and_content: HT-Seq Count raw conuts
|
| |
|
| Submission date |
Feb 26, 2018 |
| Last update date |
Apr 19, 2018 |
| Contact name |
Adam Getzler |
| E-mail(s) |
[email protected]
|
| Organization name |
TSRI-FL
|
| Street address |
130 Scripps Way
|
| City |
Jupiter |
| State/province |
FL |
| ZIP/Postal code |
33458-5284 |
| Country |
USA |
| |
|
| Platform ID |
GPL19057 |
| Series (2) |
| GSE111138 |
RNA-Seq of CD8+ T cells expressing different levels of Runx3 in during LCMV infection (in vivo) |
| GSE111149 |
Runx3 pioneers chromatin accessibility of cis-regulatory landscapes that drive memory CTL formation |
|
| Relations |
| BioSample |
SAMN08610782 |
| SRA |
SRX3744057 |
