|
| Status |
Public on Jul 25, 2019 |
| Title |
D4M4M |
| Sample type |
RNA |
| |
|
| Source name |
leukocyte transcriptome
|
| Organism |
Homo sapiens |
| Characteristics |
cell type: leukocyte
gender: M
age (months): 18.07
diagnosis: ASD
ados_coso: 20
|
| Extracted molecule |
total RNA |
| Extraction protocol |
four to six milliliters of blood were collected into ethylenediaminetetraacetic-coated tubes from all subjects. Total RNA was extracted following standard procedures and manufacturer’s instructions (Ambion)
|
| Label |
biotin
|
| Label protocol |
Standard Illumina labeling protocol
|
| |
|
| Hybridization protocol |
Standard Illumina hyb protocol
|
| Scan protocol |
Standard Illumina scanning protocol
|
| Description |
replicate1
|
| Data processing |
Outlier samples are removed. Expression data are log2 transformed and quantile normalized for probes with detection p-value <0.05 (standard settings).
|
| |
|
| Submission date |
Feb 27, 2018 |
| Last update date |
Jul 25, 2019 |
| Contact name |
Vahid H Gazestani |
| E-mail(s) |
[email protected]
|
| Organization name |
UCSD
|
| Street address |
8110 La Jolla Shores Drive, Suite 201
|
| City |
La Jolla |
| State/province |
California |
| ZIP/Postal code |
92093 |
| Country |
USA |
| |
|
| Platform ID |
GPL10558 |
| Series (2) |
| GSE111175 |
Perturbations of PI3K/AKT, RAS/ERK, WNT/B-catenin networks in leukocytes are linked to ASD genetics and fetal origins of autism |
| GSE111176 |
Transcriptional organization of autism spectrum disorder |
|
