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GEO accession:
Sample GSM305439
Query DataSets for GSM305439
Status
Public on Aug 13, 2008
Title
Schu S4 infected D6_S4
Sample type
RNA
Source name
peripheral blood monocytes
Organism
Homo sapiens
Characteristics
healthy adult
Treatment protocol
100 MOI of F. novicida or Schu S4 for 24 hours
Growth protocol
RPMI-1640 with 10% FBS
Extracted molecule
total RNA
Extraction protocol
Trizol
Label
biotin
Label protocol
Affymetrix standard
Hybridization protocol
Affymetrix standard
Scan protocol
Affymetrix standard
Description
none
Data processing
R 2.7.1 and BioConductor 2.2. gcrma package used to normalize and calculate expression values
Submission date
Jul 14, 2008
Last update date
Aug 28, 2018
Contact name
Jonathan P Butchar
E-mail(s)
[email protected]
Organization name
The Ohio State University
Department
Internal Medicine
Lab
Tridandapani
Street address
400 W. 12th Avenue
City
Columbus
State/province
OH
ZIP/Postal code
43210
Country
USA
Platform ID
GPL570
Series (1)
GSE12108
Microarray analysis of human monocytes infected with Francisella tularensis
Relations
Reanalyzed by
GSE49910
Reanalyzed by
GSE119087
Data table header descriptions
ID_REF
VALUE
log2 expression value, calculated by gcrma
Data table
ID_REF
VALUE
1007_s_at
3.37308931387247
1053_at
3.58450223075197
117_at
12.2396116710382
121_at
6.7280246996977
1255_g_at
2.32824893677822
1294_at
6.4942349809635
1316_at
4.23766559681663
1320_at
2.32824893677822
1405_i_at
11.5609883614286
1431_at
2.32824893677822
1438_at
2.32824893677822
1487_at
4.68534007725231
1494_f_at
2.99066157960285
1552256_a_at
4.03591701104145
1552257_a_at
3.6157229324814
1552258_at
3.66077095750275
1552261_at
2.3292883573124
1552263_at
6.14913328347769
1552264_a_at
6.63550997866888
1552266_at
2.56277515384561
Total number of rows:
54675
Table truncated, full table size
1480 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM305439.CEL.gz
3.9 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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