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Sample GSM310898 Query DataSets for GSM310898
Status Public on Aug 08, 2008
Title Spleen Aire-knockout A
Sample type RNA
 
Source name Spleen Aire-knockout A
Organism Mus musculus
Characteristics Spleen Aire-knockout A
Extracted molecule total RNA
Extraction protocol Affymetrix protocol
Label biotin
Label protocol Affymetrix protocol
 
Hybridization protocol Affymetrix protocol
Scan protocol AffyExp; Affymetrix experiment file (.EXP) info.; Protocol Type = AffyExp; Parameter Fluidics:Number of Wash B Cycles = 4; Parameter Fluidics:Number of Wash A1 Cycles = 10; Parameter Fluidics:Holding Temperature (C) = 25; Parameter Fluidics:Station = 1; Parameter Scanner:Scanner ID = 50208350; Parameter Fluidics:Number of Wash A2 Cycles = 10; Parameter Fluidics:Protocol = EukGE-WS2v4_450; Parameter Fluidics:Third Stain Time (seconds) = 600; Parameter Fluidics:Wash A2 Temperature (C) = 25; Parameter Fluidics:Number of Wash A3 Cycles = 15; Parameter Scanner:Scan Date = Jun 06 2007 11:23AM; Parameter Scanner:Scanner Type = M10; Parameter Sample Info:Chip Lot = 24JJA1; Parameter Scanner:Pixel Size = 1.56; Parameter Fluidics:Mixes per Wash A1 Cycle = 2; Parameter Sample Info:Comments = 25LJH2; Parameter Fluidics:Wash A3 Temperature (C) = 30; Parameter Header:Version = 1; Parameter Sample Info:Operator = gcsuser; Parameter Scanner:Number of Scans = 1; Parameter Fluidics:Module = 4; Parameter Header:Type = Affymetrix GeneChip Experiment Information; Parameter Fluidics:Mixes per Wash A3 Cycle = 4; Parameter Fluidics:Wash B Temperature (C) = 50; Parameter Fluidics:First Stain Time (seconds) = 600; Parameter Fluidics:Hybridize Date = Jun 06 2007 10:34AM; Parameter Fluidics:Second Stain Time (seconds) = 600; Parameter Sample Info:Sample Type = Mouse; Parameter Sample Info:Chip Type = Mouse430_2; Parameter Fluidics:Stain Temperature (C) = 25; Parameter Fluidics:Mixes per Wash B Cycle = 15; Parameter Fluidics:Wash A1 Temperature (C) = 25; Parameter Scanner:Filter = 570; Parameter Sample Info:Project = Anderson Peripheral AIRE; Parameter Fluidics:Mixes per Wash A2 Cycle = 4; Performer: David,,Wong
Description Image: http://smd.stanford.edu/MicroArray/gifs/2008-07/80541.gif
Data processing MAS5
 
Submission date Aug 08, 2008
Last update date Aug 28, 2018
Contact name David Wong
E-mail(s) [email protected]
Phone 650-736-0305
Fax 650-723-8762
Organization name Stanford University
Street address 269 Campus Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL1261
Series (1)
GSE12388 Deletional Tolerance Mediated by Extrathymic Aire-Expressing Cells
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE MAS5 Signal
DETECTION P-VALUE
ABS_CALL

Data table
ID_REF VALUE DETECTION P-VALUE ABS_CALL
AFFX-BioB-5_at 2056.36 4.42873e-005 P
AFFX-BioB-M_at 3453.1 4.42873e-005 P
AFFX-BioB-3_at 2639.42 4.42873e-005 P
AFFX-BioC-5_at 4613.69 4.42873e-005 P
AFFX-BioC-3_at 2482.3 4.42873e-005 P
AFFX-BioDn-5_at 5836.17 4.42873e-005 P
AFFX-BioDn-3_at 13843.8 4.42873e-005 P
AFFX-CreX-5_at 25799 5.16732e-005 P
AFFX-CreX-3_at 25120.5 4.42873e-005 P
AFFX-DapX-5_at 11.3448 0.205712 A
AFFX-DapX-M_at 2.64806 0.749204 A
AFFX-DapX-3_at 8.79681 0.396911 A
AFFX-LysX-5_at 0.611612 0.804837 A
AFFX-LysX-M_at 9.82293 0.287743 A
AFFX-LysX-3_at 0.936454 0.852061 A
AFFX-PheX-5_at 1.04481 0.971543 A
AFFX-PheX-M_at 2.34864 0.843268 A
AFFX-PheX-3_at 8.46476 0.313723 A
AFFX-ThrX-5_at 3.2002 0.645547 A
AFFX-ThrX-M_at 5.61145 0.470241 A

Total number of rows: 45101

Table truncated, full table size 1389 Kbytes.




Supplementary file Size Download File type/resource
GSM310898.CEL.gz 6.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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