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GEO accession:
Sample GSM310898
Query DataSets for GSM310898
Status
Public on Aug 08, 2008
Title
Spleen Aire-knockout A
Sample type
RNA
Source name
Spleen Aire-knockout A
Organism
Mus musculus
Characteristics
Spleen Aire-knockout A
Extracted molecule
total RNA
Extraction protocol
Affymetrix protocol
Label
biotin
Label protocol
Affymetrix protocol
Hybridization protocol
Affymetrix protocol
Scan protocol
AffyExp; Affymetrix experiment file (.EXP) info.; Protocol Type = AffyExp; Parameter Fluidics:Number of Wash B Cycles = 4; Parameter Fluidics:Number of Wash A1 Cycles = 10; Parameter Fluidics:Holding Temperature (C) = 25; Parameter Fluidics:Station = 1; Parameter Scanner:Scanner ID = 50208350; Parameter Fluidics:Number of Wash A2 Cycles = 10; Parameter Fluidics:Protocol = EukGE-WS2v4_450; Parameter Fluidics:Third Stain Time (seconds) = 600; Parameter Fluidics:Wash A2 Temperature (C) = 25; Parameter Fluidics:Number of Wash A3 Cycles = 15; Parameter Scanner:Scan Date = Jun 06 2007 11:23AM; Parameter Scanner:Scanner Type = M10; Parameter Sample Info:Chip Lot = 24JJA1; Parameter Scanner:Pixel Size = 1.56; Parameter Fluidics:Mixes per Wash A1 Cycle = 2; Parameter Sample Info:Comments = 25LJH2; Parameter Fluidics:Wash A3 Temperature (C) = 30; Parameter Header:Version = 1; Parameter Sample Info:Operator = gcsuser; Parameter Scanner:Number of Scans = 1; Parameter Fluidics:Module = 4; Parameter Header:Type = Affymetrix GeneChip Experiment Information; Parameter Fluidics:Mixes per Wash A3 Cycle = 4; Parameter Fluidics:Wash B Temperature (C) = 50; Parameter Fluidics:First Stain Time (seconds) = 600; Parameter Fluidics:Hybridize Date = Jun 06 2007 10:34AM; Parameter Fluidics:Second Stain Time (seconds) = 600; Parameter Sample Info:Sample Type = Mouse; Parameter Sample Info:Chip Type = Mouse430_2; Parameter Fluidics:Stain Temperature (C) = 25; Parameter Fluidics:Mixes per Wash B Cycle = 15; Parameter Fluidics:Wash A1 Temperature (C) = 25; Parameter Scanner:Filter = 570; Parameter Sample Info:Project = Anderson Peripheral AIRE; Parameter Fluidics:Mixes per Wash A2 Cycle = 4; Performer: David,,Wong
Description
Image:
http://smd.stanford.edu/MicroArray/gifs/2008-07/80541.gif
Data processing
MAS5
Submission date
Aug 08, 2008
Last update date
Aug 28, 2018
Contact name
David Wong
E-mail(s)
[email protected]
Phone
650-736-0305
Fax
650-723-8762
Organization name
Stanford University
Street address
269 Campus Drive
City
Stanford
State/province
CA
ZIP/Postal code
94305
Country
USA
Platform ID
GPL1261
Series (1)
GSE12388
Deletional Tolerance Mediated by Extrathymic Aire-Expressing Cells
Relations
Reanalyzed by
GSE119085
Data table header descriptions
ID_REF
VALUE
MAS5 Signal
DETECTION P-VALUE
ABS_CALL
Data table
ID_REF
VALUE
DETECTION P-VALUE
ABS_CALL
AFFX-BioB-5_at
2056.36
4.42873e-005
P
AFFX-BioB-M_at
3453.1
4.42873e-005
P
AFFX-BioB-3_at
2639.42
4.42873e-005
P
AFFX-BioC-5_at
4613.69
4.42873e-005
P
AFFX-BioC-3_at
2482.3
4.42873e-005
P
AFFX-BioDn-5_at
5836.17
4.42873e-005
P
AFFX-BioDn-3_at
13843.8
4.42873e-005
P
AFFX-CreX-5_at
25799
5.16732e-005
P
AFFX-CreX-3_at
25120.5
4.42873e-005
P
AFFX-DapX-5_at
11.3448
0.205712
A
AFFX-DapX-M_at
2.64806
0.749204
A
AFFX-DapX-3_at
8.79681
0.396911
A
AFFX-LysX-5_at
0.611612
0.804837
A
AFFX-LysX-M_at
9.82293
0.287743
A
AFFX-LysX-3_at
0.936454
0.852061
A
AFFX-PheX-5_at
1.04481
0.971543
A
AFFX-PheX-M_at
2.34864
0.843268
A
AFFX-PheX-3_at
8.46476
0.313723
A
AFFX-ThrX-5_at
3.2002
0.645547
A
AFFX-ThrX-M_at
5.61145
0.470241
A
Total number of rows:
45101
Table truncated, full table size
1389 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM310898.CEL.gz
6.0 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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