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GEO accession:
Sample GSM313347
Query DataSets for GSM313347
Status
Public on Sep 30, 2009
Title
PGP9f (Illumina Ref-8 v2.0)
Sample type
RNA
Source name
Human primary fibroblasts, PGP9
Organism
Homo sapiens
Characteristics
Derived from 3-mm skin biopsy on 4-Dec-2008.
Healthy adult female
Matched EBV-B-lymphocyte GM21833 (Coriell)
Growth protocol
15% NCS DMEM/F12 + 10ng/ml EGF
Extracted molecule
total RNA
Extraction protocol
Per Qiagen RNeasy Mini Protocol
Label
Biotin
Label protocol
See manufacturer's protocol (
http://www.illumina.com/downloads/WholeGenomeExpressionTechnicalBulletin.pdf
)
Hybridization protocol
See manufacturer's protocol (
http://www.illumina.com/downloads/WholeGenomeExpressionTechnicalBulletin.pdf
)
Scan protocol
See manufacturere's (Illumina,Inc) technical manual (BeadXpress Reader)
(
http://www.illumina.com/downloads/BeadXpressReaderDataSheet.pdf
)
Description
Data from UCSD Kun Zhang.
Data processing
Quantile Normalization
BeadStudio (Illumina, Inc). For details, see
http://www.illumina.com/downloads/GXBeadStudioNormalization_TechNote.pdf
Submission date
Aug 18, 2008
Last update date
Oct 03, 2008
Contact name
Je Hyuk Lee
E-mail(s)
[email protected]
Phone
(617) 432-7157
Organization name
Harvard Medical School
Department
Wyss Institute
Lab
Church
Street address
3 Blackfan Circle, CLSB 528
City
Boston
State/province
MA
ZIP/Postal code
02115
Country
USA
Platform ID
GPL6104
Series (1)
GSE12478
Induction of developmental and inflammatory transcriptomes in PGP fibroblasts
Data table header descriptions
ID_REF
VALUE
Average Bead Intensity
Data table
ID_REF
VALUE
ILMN_1809034
358.6308
ILMN_1660305
305.1873
ILMN_1792173
357.1656
ILMN_1762337
44.17699
ILMN_1736007
65.25801
ILMN_1787689
68.50607
ILMN_1731507
49.08229
ILMN_1814316
60.13296
ILMN_1745607
175.0456
ILMN_1757454
68.6804
ILMN_1735045
348.0409
ILMN_1680754
81.27699
ILMN_1659452
53.98033
ILMN_1767388
165.5926
ILMN_1673870
66.55963
ILMN_1675204
53.93992
ILMN_1755321
213.2415
ILMN_1698554
323.0849
ILMN_1805938
57.73166
ILMN_1676336
391.443
Total number of rows:
22184
Table truncated, full table size
474 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM313347.txt.gz
333.0 Kb
(ftp)
(http)
TXT
Processed data included within Sample table
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