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Sample GSM3143563 Query DataSets for GSM3143563
Status Public on Nov 06, 2018
Title AAA0500975
Sample type RNA
 
Source name D75
Organism Homo sapiens
Characteristics tissue: intestine
disease state: ulcerative colitis
individual: patients with active ulcerative colitis before receiving glucocorticoids and who will have a poor response to treatment (non-responders, NR)
Extracted molecule total RNA
Extraction protocol RNA was extracted from the described tissues using miRNeasy Mini Kit (QIAGEN)
Label Biotin
Label protocol TargetAmp™ Nano-g™ Biotin-aRNA Labeling Kit for the Illumina® System (Epicentre)
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description G3_intestinal samples from patients with active ulcerative colitis before receiving glucocorticoids and who will have a poor response to treatment (non-responders, NR)
Data processing The data were normalised using quantile normalisation with lumi in R
 
Submission date May 16, 2018
Last update date Nov 06, 2018
Contact name Ana Maria Aransay
E-mail(s) [email protected]
Phone 0034944061325
Organization name CIC bioGUNE
Department Genome Analysis Platform
Street address Parque tecnologico de Bizkaia, Building 801-A
City Derio
State/province BIZKAIA
ZIP/Postal code 48160
Country Spain
 
Platform ID GPL14951
Series (2)
GSE114527 A systems biology approach identifies ANP32E and other biomarkers of glucocorticoid refractoriness in ulcerative colitis [microarray]
GSE114603 A systems biology approach identifies ANP32E and other biomarkers of glucocorticoid refractoriness in ulcerative colitis

Data table header descriptions
ID_REF
VALUE log2 transformed and quantile normalized
Detection_Pval

Data table
ID_REF VALUE Detection_Pval
ILMN_1762337 6.305339511 0.337931
ILMN_2055271 6.327372149 0.2517241
ILMN_2383229 7.352595975 0
ILMN_1806310 7.7113418 0
ILMN_1779670 6.282560307 0.462069
ILMN_1717783 6.228420027 0.7448276
ILMN_1814316 6.365900405 0.1206897
ILMN_2359168 6.2321722 0.7344828
ILMN_1731507 6.216923424 0.7827586
ILMN_1787689 6.208401676 0.8137931
ILMN_3241953 6.692126864 0
ILMN_1745607 8.143243691 0
ILMN_2136495 6.274220775 0.5068966
ILMN_1668111 6.287606513 0.4206896
ILMN_2295559 6.351993968 0.1482759
ILMN_1735045 6.740103262 0
ILMN_1680754 6.33918405 0.1931034
ILMN_2375184 6.250385125 0.6517242
ILMN_1659452 6.323333888 0.2724138
ILMN_1767388 6.303540436 0.337931

Total number of rows: 29377

Table truncated, full table size 917 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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