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Sample GSM3152682 Query DataSets for GSM3152682
Status Public on Jul 16, 2019
Title MDS patient#289
Sample type RNA
 
Source name MDS patient
Organism Homo sapiens
Characteristics subject status: MDS patient#289
subject id: Myelodysplastic syndromes (MDS)
tissue: bone marrow
cell type: mononucleated cells
Treatment protocol not applicable
Growth protocol Mononucleated cells from the bone marrow samples of the MDS patients and the healthy controls
Extracted molecule total RNA
Extraction protocol TRIzol
Label biotin
Label protocol According to the protocols of Affymetrix Gene Expression Service Lab, Academia Sinica, Taiwan
 
Hybridization protocol According to the protocols of Affymetrix Gene Expression Service Lab, Academia Sinica, Taiwan
Scan protocol According to the protocols of Affymetrix Gene Expression Service Lab, Academia Sinica, Taiwan
Description MDS966_(HTA-2_0)
Data processing Data were processed using Expression Console software with RMA normalization.
probe group file: HTA-2_0.r3.pgf
meta-probeset file: HTA-2_0.r3.Psrs.mps
 
Submission date May 24, 2018
Last update date Jul 16, 2019
Contact name Huai-Hsuan Huang
E-mail(s) [email protected]
Organization name National Taiwan University Hospital
Department Internal Medicine
Street address No.7, Chong-Shan South Road, Zhongzheng Dist.
City Taipei City
State/province Taiwan
ZIP/Postal code 100
Country Taiwan
 
Platform ID GPL17586
Series (1)
GSE114869 Long non-coding RNA HOXB-AS3 promotes myeloid cell proliferation and its higher expression is an adverse prognostic marker in myeloid malignancies [MDS_normal]

Data table header descriptions
ID_REF
VALUE RMA normalized gene level expression values from Expression Console software

Data table
ID_REF VALUE
TC01000001.hg.1 5.860635
TC01000002.hg.1 3.810318
TC01000003.hg.1 3.467043
TC01000004.hg.1 4.457035
TC01000005.hg.1 11.88128
TC01000006.hg.1 17.48223
TC01000007.hg.1 17.0923
TC01000008.hg.1 7.874469
TC01000009.hg.1 4.050614
TC01000010.hg.1 3.411936
TC01000011.hg.1 6.563997
TC01000012.hg.1 4.702086
TC01000013.hg.1 14.38641
TC01000014.hg.1 4.189522
TC01000015.hg.1 5.334379
TC01000016.hg.1 6.232931
TC01000017.hg.1 4.430409
TC01000018.hg.1 7.736556
TC01000019.hg.1 5.339433
TC01000020.hg.1 4.489734

Total number of rows: 70523

Table truncated, full table size 1724 Kbytes.




Supplementary file Size Download File type/resource
GSM3152682_MDS966_HTA-2_0_.CEL.gz 22.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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