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Sample GSM3215 Query DataSets for GSM3215
Status Public on Apr 15, 2004
Title jzo013-rp1-v5-u74av2-met
Sample type RNA
 
Source name retina
Organism Mus musculus
Extracted molecule total RNA
 
Description Mice used were in a mixed background between 129/SvEv and C57BL/6. They were wildtype littermates of Rp1-/- mice used in parallel experiments. At P10, mice were sacrificed, followed by removal of retinal. Each RNA sample included a pool of neural retinas from 3-4 mice. Retinas were all collected at 1-2 pm of the day.
 
Submission date Dec 16, 2002
Last update date Nov 02, 2016
Contact name Jiewu Liu
E-mail(s) [email protected]
Phone 901-495-3893
Organization name St. Jude Children's Research Hospital
Department Department of Developmental Neurobiology
Lab Jian Zuo's Lab
Street address 332 N. Lauderdale St.
City Memphis
State/province TN
ZIP/Postal code 38105
Country USA
 
Platform ID GPL81
Series (2)
GSE118 P10 wildtype
GSE128 Rp1 knockout mice retinal development

Data table header descriptions
ID_REF
Stat Pairs The number of probe pairs in the probe set.
Stat Pairs Used The number of probe pairs in the probe set used in the Detection call.
VALUE A quantitative measure of the relative abundance of a transcript.
ABS_CALL A qualitative measurement indicating if the transcript is detected (Present), not detected (Absent), or marginally detected (Marginal).
Detection p-value A p-value indicating the significance of the Detection call. A Detection p-value measures the probability the the discrimination scores of all probe pairs in the probe set are above a certain level (Tau), and that the target is likely to be Present.

Data table
ID_REF Stat Pairs Stat Pairs Used VALUE ABS_CALL Detection p-value
AFFX-MurIL2_at 20 20 66.2 A 0.724854
AFFX-MurIL10_at 20 20 104 A 0.5
AFFX-MurIL4_at 20 20 58.5 A 0.645559
AFFX-MurFAS_at 20 20 112.7 A 0.440646
AFFX-BioB-5_at 20 20 1341.5 P 0.000297
AFFX-BioB-M_at 20 20 4003.2 P 0.000044
AFFX-BioB-3_at 20 20 2456.3 P 0.00007
AFFX-BioC-5_at 20 20 6322.6 P 0.000052
AFFX-BioC-3_at 20 20 3513.6 P 0.00006
AFFX-BioDn-5_at 20 20 6915 P 0.000052
AFFX-BioDn-3_at 20 20 25257.4 P 0.000044
AFFX-CreX-5_at 20 20 48697.5 P 0.000044
AFFX-CreX-3_at 20 20 77330.4 P 0.000044
AFFX-BioB-5_st 20 20 45 A 0.645547
AFFX-BioB-M_st 20 20 232.4 A 0.275146
AFFX-BioB-3_st 20 20 159.9 A 0.617401
AFFX-BioC-5_st 20 20 51.8 A 0.9273
AFFX-BioC-3_st 20 20 37.6 A 0.686277
AFFX-BioDn-5_st 20 20 454.3 P 0.020022
AFFX-BioDn-3_st 20 20 422.9 M 0.058444

Total number of rows: 12488

Table truncated, full table size 396 Kbytes.




Supplementary file Size Download File type/resource
GSM3215_jzo013-rp1-v5-u74av2.CEL.gz 2.5 Mb (ftp)(http) CEL

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