NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM3231 Query DataSets for GSM3231
Status Public on Apr 15, 2004
Title jzo008-rp1-v5-u74av2-met
Sample type RNA
 
Source name retina
Organism Mus musculus
Extracted molecule total RNA
 
Description Mice used were in a mixed background between 129/SvEv and C57BL/6. They were Rp1 knockout mice (Rp1-/-). At P14, mice were sacrificed, followed by removal of retinal. Each RNA sample included a pool of neural retinas from 3-4 mice. Retinas were all collected at 1-2 pm of the day.
 
Submission date Dec 16, 2002
Last update date Nov 02, 2016
Contact name Jiewu Liu
E-mail(s) [email protected]
Phone 901-495-3893
Organization name St. Jude Children's Research Hospital
Department Department of Developmental Neurobiology
Lab Jian Zuo's Lab
Street address 332 N. Lauderdale St.
City Memphis
State/province TN
ZIP/Postal code 38105
Country USA
 
Platform ID GPL81
Series (2)
GSE125 P14 knockout
GSE128 Rp1 knockout mice retinal development

Data table header descriptions
ID_REF
Stat Pairs The number of probe pairs in the probe set.
Stat Pairs Used The number of probe pairs in the probe set used in the Detection call.
VALUE A quantitative measure of the relative abundance of a transcript.
ABS_CALL A qualitative measurement indicating if the transcript is detected (Present), not detected (Absent), or marginally detected (Marginal).
Detection p-value A p-value indicating the significance of the Detection call. A Detection p-value measures the probability the the discrimination scores of all probe pairs in the probe set are above a certain level (Tau), and that the target is likely to be Present.

Data table
ID_REF Stat Pairs Stat Pairs Used VALUE ABS_CALL Detection p-value
AFFX-MurIL2_at 20 20 40.5 A 0.814869
AFFX-MurIL10_at 20 20 60.7 A 0.470241
AFFX-MurIL4_at 20 20 32.1 A 0.843268
AFFX-MurFAS_at 20 20 120.7 A 0.195266
AFFX-BioB-5_at 20 20 1764.3 P 0.000297
AFFX-BioB-M_at 20 20 4162.6 P 0.000044
AFFX-BioB-3_at 20 20 2595.4 P 0.00007
AFFX-BioC-5_at 20 20 4790.4 P 0.000052
AFFX-BioC-3_at 20 20 3968.4 P 0.00007
AFFX-BioDn-5_at 20 20 6395.8 P 0.000044
AFFX-BioDn-3_at 20 20 21816.1 P 0.000044
AFFX-CreX-5_at 20 20 42833.1 P 0.000044
AFFX-CreX-3_at 20 20 55360.6 P 0.000044
AFFX-BioB-5_st 20 20 191.2 A 0.262827
AFFX-BioB-M_st 20 20 163.5 A 0.327079
AFFX-BioB-3_st 20 20 166.7 A 0.686277
AFFX-BioC-5_st 20 20 58.8 A 0.783476
AFFX-BioC-3_st 20 20 15 A 0.659339
AFFX-BioDn-5_st 20 20 459.7 M 0.042962
AFFX-BioDn-3_st 20 20 364.2 P 0.009337

Total number of rows: 12488

Table truncated, full table size 396 Kbytes.




Supplementary file Size Download File type/resource
GSM3231_jzo008-rp1-v5-u74av2.CEL.gz 2.6 Mb (ftp)(http) CEL

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap