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GEO accession:
Sample GSM326029
Query DataSets for GSM326029
Status
Public on Mar 01, 2009
Title
EhMyb-dr OX replicate 1
Sample type
RNA
Source name
Trophozoites overexpressing Myc-EhMyb-dr
Organism
Entamoeba histolytica
Characteristics
Strain: HM1:IMSS
Media: TYI + G418
Long term axenic growth
Extracted molecule
total RNA
Extraction protocol
Trizol_RNeasy
Label
biotin
Label protocol
Affymetrix single amplification
Hybridization protocol
Standard Affymetrix
Scan protocol
Standard Affymetrix
Description
Trophozoites after long term axenic growth. Isolated mid-log phase.
Data processing
GCOS scaling only- target 500
Submission date
Oct 02, 2008
Last update date
Dec 22, 2008
Contact name
Gretchen Marie Ehrenkaufer
E-mail(s)
[email protected]
Organization name
Stanford Uninversity
Department
Microbiology and Immunology
Lab
Singh
Street address
Grant S-143, 300 Pasteur Dr.
City
Stanford
State/province
CA
ZIP/Postal code
94305
Country
USA
Platform ID
GPL4622
Series (1)
GSE13023
Effects of overexpression of EhMyb-dr on transcription in Entamoeba histolytica
Data table header descriptions
ID_REF
VALUE
Scaled Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
Data table
ID_REF
VALUE
ABS_CALL
AFFX-BioB-5_at
1089.3
P
AFFX-BioB-M_at
1505.6
P
AFFX-BioB-3_at
976.8
P
AFFX-BioC-5_at
2151.9
P
AFFX-BioC-3_at
2403.2
P
AFFX-BioDn-5_at
5955.6
P
AFFX-BioDn-3_at
11018.1
P
AFFX-CreX-5_at
27209.7
P
AFFX-CreX-3_at
31614.5
P
AFFX-DapX-5_at
4579.1
P
AFFX-DapX-M_at
12126.8
P
AFFX-DapX-3_at
19644.4
P
AFFX-LysX-5_at
772
P
AFFX-LysX-M_at
1636.8
P
AFFX-LysX-3_at
3056.3
P
AFFX-PheX-5_at
1019.4
P
AFFX-PheX-M_at
1961.2
P
AFFX-PheX-3_at
3666.9
P
AFFX-ThrX-5_at
1391.9
P
AFFX-ThrX-M_at
2776.6
P
Total number of rows:
11478
Table truncated, full table size
249 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM326029.CEL.gz
1.7 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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