NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM329080 Query DataSets for GSM329080
Status Public on Oct 07, 2009
Title GFP Untreated 24hr 282295833
Sample type RNA
 
Source name GFP_Untreated_24hr
Organism Homo sapiens
Characteristics Extract:LOX-1:113501
Extract Description:GFP_Untreated_24hr:113501
Quality: Classification:Good
Quality: Gradient Severity:0.04
Quality: Distortion Severity:0.09
Quality: Defective Area (%):0
Quality: Outlier Area (%):0.01
Quality: 3'/5' Mean:1.66
Quality: Background Mean Dev.:0.38
Quality: Absent (%):56.87
Quality: Absent (%) Dev.:1.07
Quality: Scaling Factor:0.52
Quality: Scaling Factor Dev.:0.75
Pretreatment [C]:GFP
Time point [C]:24 hours
Treatment [C]:(Not applicable)
Genomic ID [C]:113501
Cell name [C]:HAECT
Treatment amount [C]:(Not applicable)
Cell type [C]:Endothelial
Organism species [C]:Human:Homo sapiens
Cohort name [C]:GFP_Untreated_24hr
RNA extraction source key [A]:282295833
Extracted molecule polyA RNA
Extraction protocol RNA was extracted from HAECT cells
Label biotin
Label protocol Affymetrix in-vitro labeling protocol
 
Hybridization protocol Affymetrix standard hybridization protocol
Scan protocol Affymetrix standard scan protocol
Description GFP_Untreated_24hr:113501
Data processing Affymetrix MAS 5.0 algorithm
 
Submission date Oct 09, 2008
Last update date Oct 07, 2009
Contact name Andrew Hill
E-mail(s) [email protected]
Phone 617-674-6341
Organization name Pfizer
Department Research Business Technology
Street address 300 Technology Square
City Cambridge
State/province MA
ZIP/Postal code 02139
Country USA
 
Platform ID GPL570
Series (1)
GSE13139 LOX-1-dependent transcriptional regulation after oxidized LDL (OxLDL) treatment of human aortic endothelial cells.

Data table header descriptions
ID_REF Affymetrix Probeset
VALUE MAS 5.0 Signal value
DETECTION_PVALUE MAS 5.0 Detection p-value

Data table
ID_REF VALUE DETECTION_PVALUE
AFFX-HSAC07/X00351_5_at 6919.943848 .000044
200054_at 283.318665 .000732
200097_s_at 2086.200928 .000244
200602_at 1140.23584 .000244
200624_s_at 1976.071045 .000244
200641_s_at 2452.466797 .000244
200669_s_at 1348.960327 .000244
200726_at 2024.934204 .000244
200728_at 2693.606445 .000244
200750_s_at 3849.454102 .000244
200758_s_at 912.13269 .000732
200759_x_at 773.532654 .000244
200777_s_at 2192.419434 .000244
200779_at 2527.061523 .000244
200818_at 1947.287842 .000244
200879_s_at 365.511871 .000244
200957_s_at 1010.211487 .000244
201012_at 4641.077148 .000244
201158_at 276.565674 .001221
201164_s_at 562.791565 .000244

Total number of rows: 54675

Table truncated, full table size 1510 Kbytes.




Supplementary file Size Download File type/resource
GSM329080.cel.gz 7.8 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap