NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM33132 Query DataSets for GSM33132
Status Public on Jan 26, 2007
Title eye development (Cy3) vs mouth opening stage (Cy5)
Sample type RNA
 
Channel 1
Source name eye development (Cy3)
Organism Sparus aurata
Extracted molecule total RNA
 
Channel 2
Source name mouth opening stage (Cy5)
Organism Sparus aurata
Extracted molecule total RNA
 
 
Description mouth opening stage (Cy5) (144hpf) vs eye development and pectoral fin budding stage (96 hpf)(Cy3)
 
Submission date Oct 24, 2004
Last update date Jan 26, 2007
Contact name Elena Athina Sarropoulou
E-mail(s) [email protected]
Phone +302810227819
Organization name HCMR
Department Marine Biology and Genetics
Street address
City Heraklion
ZIP/Postal code 715 00
Country Greece
 
Platform ID GPL1516
Series (1)
GSE1887 early developmental stages of sea bream

Data table header descriptions
ID_REF
Flag Numeric code of the flag for the spot
VALUE log2 (Signal Median_Cy5/Signal Median-Cy3)
Signal Mean-Cy3 Pixel intensity averaged over the local signal region . Cy3
Signal Mean_Cy5 Pixel intensity averaged over the local signal region. Cy5
Background Mean-Cy3 Pixel intensity averaged over the local background region. Cy3
Background Mean_Cy5 Pixel intensity averaged over the local background region. Cy5
Signal Median-Cy3 Median pixel intensity computed over the local signal region . Cy3
Signal Median_Cy5 Median pixel intensity computed over the local signal region. Cy5
Background Median-Cy3 Median pixel intensity computed over the local background region. Cy3
Background Median_Cy5 Median pixel intensity computed over the local background region . Cy5
Signal Mode-Cy3 Mode pixel intensity computed over the local signal region . Cy3
Signal Mode_Cy5 Mode pixel intensity computed over the local signal region. Cy5
Background Mode-Cy3 Mode pixel intensity computed over the local background region. Cy3
Background Mode_Cy5 Mode pixel intensity computed over the local background region. Cy5
Signal Area-Cy3 Number of pixels in the local signal region . Cy3
Signal Area_Cy5 Number of pixels in the local signal region. Cy5
Background Area-Cy3 Number of pixels in the local background region. Cy3
Background Area_Cy5 Number of pixels in the local background region. Cy5
Signal Total-Cy3 Total pixel intensity summed over the local signal region. Cy3
Signal Total_Cy5 Total pixel intensity summed over the local signal region. Cy5
Background Total-Cy3 Total pixel intensity summed over the local background region. Cy3
Background Total_Cy5 Total pixel intensity summed over the local background region. Cy5
Signal Stdev-Cy3 Standard deviation of pixel intensities over the local signal region. Cy3
Signal Stdev_Cy5 Standard deviation of pixel intensities over the local signal region. Cy5

Data table
ID_REF Flag VALUE Signal Mean-Cy3 Signal Mean_Cy5 Background Mean-Cy3 Background Mean_Cy5 Signal Median-Cy3 Signal Median_Cy5 Background Median-Cy3 Background Median_Cy5 Signal Mode-Cy3 Signal Mode_Cy5 Background Mode-Cy3 Background Mode_Cy5 Signal Area-Cy3 Signal Area_Cy5 Background Area-Cy3 Background Area_Cy5 Signal Total-Cy3 Signal Total_Cy5 Background Total-Cy3 Background Total_Cy5 Signal Stdev-Cy3 Signal Stdev_Cy5
1 2 -1.099 669.4888889 417.0444444 610.5118483 326.6540284 685 320 583 281 694.6666667 311.4615385 552.8026316 200.4736842 45 45 211 211 30127 18767 128818 68924 276.9509882 302.6569716
2 0 -0.292 2479.831169 2045.371429 661.7735849 487.2283105 2375 1940 646.5 424 2479.125 2428.055556 619.1282051 188.4090909 77 70 212 219 190947 143176 140296 106703 778.5503079 713.6031144
3 0 -0.64 9730.609524 6640.836957 677.5666667 648.9877301 10767 6909.5 647 595 12134.95652 8072.95 633.9078947 471.9176471 105 92 150 163 1021714 610957 101635 105785 4881.161914 2413.087033
4 3 -0.106 1635.190476 1441.222222 586.5 537.4123223 1603 1490 525.5 436 1665.615385 1497.416667 513.2688172 287.5405405 63 45 192 211 103017 64855 112608 113394 444.074456 655.0923222
5 0 -0.388 4829.967742 3894.378947 582.0255102 447.9587629 4487 3429 538.5 390 6724.473684 3578.647059 432.0519481 364.3978495 93 95 196 194 449187 369966 114077 86904 2424.906913 2063.484693
6 0 -0.04 16372.66964 15246.01818 610.5314685 505.7448276 17653 17171 526 356 23739.875 19743 450.0895522 196.7974684 112 110 143 145 1833739 1677062 87306 73333 8391.918503 7450.03124
7 0 -0.269 19498.43103 15928.00862 682.8489209 604.2230216 20612 17110 578 449 31467.76923 21751.66667 564.8571429 355.7820513 116 116 139 139 2261818 1847649 94916 83987 10218.70809 8079.630212
8 0 -0.081 4321.971429 3946.86 592.0359281 485.0174419 4342 4107 574 388.5 5331.5 4447.75 633.0588235 231.7070707 105 100 167 172 453807 394686 98870 83423 1298.305104 1310.247343
9 0 -0.287 5653.553191 4721.89899 589.9627329 515.4230769 5908.5 4845 509 476 6103.454545 5384.44 450.6153846 305.2325581 94 99 161 156 531434 467468 94984 80406 1953.207878 2060.385928
10 0 -0.037 4497.622449 4400.533981 537.3965517 469.4023669 4697 4579 465.5 389 4802.333333 5234.392857 288.5373134 384.8939394 98 103 174 169 440767 453255 93507 79329 1248.243807 1398.099638
11 0 -0.165 8034.867257 7031.663717 540.8601399 578.958042 8561 7637 478 454 10210.36667 8615.103448 544.1346154 312.313253 113 113 143 143 907940 794578 77343 82791 2915.916546 2553.247922
12 0 -0.014 4539.559633 4407.542056 583.0408163 481.6845638 4489 4446 507 401 4985.590164 4634.6 422.2826087 303.1911765 109 107 147 149 494812 471607 85707 71771 2366.02101 1406.188693
13 0 -0.063 11717.02679 11192.92523 571.1398601 598.2702703 12398.5 11869 498 522.5 18313.73913 16600.68182 445.6521739 442.3392857 112 107 143 148 1312307 1197643 81673 88544 5999.567371 5262.748121
14 0 -0.087 3961.39823 3873.301887 511.7464789 503.7651007 4155 3913 470 430 4287.321429 4444.806452 349.6779661 354.375 113 106 142 149 447638 410570 72668 75061 1360.345678 1328.709582
15 0 0.126 7643.31068 8557.091837 433.9802632 537.1656051 8178 8921.5 363 429 9466.296296 9642.52381 316.0123457 409.8023256 103 98 152 157 787261 838595 65965 84335 3355.075957 3679.883253
16 0 -0.249 5567.074468 4830.326733 537.2640449 492.1695906 5725 4819 467.5 429 5736.347826 6233.210526 384.9052632 239.8076923 94 101 178 171 523305 487863 95633 84161 1968.278902 2130.110168
17 0 -0.504 1054.207547 790.75 445.4554455 516.7794872 984 694 405.5 492 1006.923077 700.2 335.7142857 529.4375 53 60 202 195 55873 47445 89982 100772 388.9730727 423.2873581
18 0 -0.209 1147.72549 904.95 434.1722689 446.3187773 1038 898.5 377 374 1033.076923 908.4666667 225.4177215 261.0512821 51 60 238 229 58534 54297 103333 102207 419.6028972 409.0009953
19 0 -0.247 1743.347222 1545.315068 481.5253456 447.9305556 1648.5 1390 460 401 1733.833333 1479 464.6710526 221.2539683 72 73 217 216 125521 112808 104491 96753 546.4172744 585.5414045
20 3 0.108 1913.507463 2066.2 488.3849372 452.406639 1811 1951 450 386 1760.809524 1967.875 425.1472868 94.83076923 67 65 239 241 128205 134303 116724 109030 694.5042981 891.9591263

Total number of rows: 21600

Table truncated, full table size 3985 Kbytes.




Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap