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Sample GSM33134 Query DataSets for GSM33134
Status Public on Oct 27, 2004
Title body wall 1
Sample type RNA
 
Source name BCBL-1 cell
Organism Homo sapiens
Extracted molecule total RNA
 
Description Gene expression profiling in BCBL-1 cell line.
Gene expression profiling of three PEL cell lines compare to three Burkitt's lymphoma lines to figure out the changed genes under KSHV latent infection.
RNA was extracted using RNAzol. Targets were produced using standard Affymetrix procedures from about 8ug of total RNA.
Keywords = BCBL-1,KSHV,LANA,Gene expression profiling.
 
Submission date Oct 24, 2004
Last update date May 27, 2005
Contact name Feng-Qi An
E-mail(s) [email protected]
Phone 216-368-5543
Organization name Case Western Reserve University
Department Pathology
Lab Edward Medof
Street address 10900 Euclid Avenue
City Cleveland
State/province OH
ZIP/Postal code 44106
Country USA
 
Platform ID GPL91
Series (1)
GSE1880 Role of LANA in KSHV latent infection

Data table header descriptions
ID_REF Affymetrix HG-U95Av2 probe set ID
VALUE 'signal' a measure of the abundance of a transcript
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 112.1 A 0.852061
AFFX-MurIL10_at 135.3 A 0.41138
AFFX-MurIL4_at 270.4 A 0.327079
AFFX-MurFAS_at 112.1 A 0.548046
AFFX-BioB-5_at 792.6 A 0.108979
AFFX-BioB-M_at 3349 P 0.000972
AFFX-BioB-3_at 2866.5 P 0.009337
AFFX-BioC-5_at 9425 P 0.000199
AFFX-BioC-3_at 7829.6 P 0.000052
AFFX-BioDn-5_at 11507.5 P 0.00011
AFFX-BioDn-3_at 30508.8 P 0.000147
AFFX-CreX-5_at 38996.7 P 0.000066
AFFX-CreX-3_at 43346.9 P 0.000117
AFFX-BioB-5_st 137.3 A 0.52976
AFFX-BioB-M_st 158.9 A 0.860518
AFFX-BioB-3_st 316.4 A 0.760937
AFFX-BioC-5_st 117.3 A 0.893894
AFFX-BioC-3_st 110.2 A 0.794268
AFFX-BioDn-5_st 1336.5 A 0.205732
AFFX-BioDn-3_st 273.4 A 0.425962

Total number of rows: 12626

Table truncated, full table size 321 Kbytes.




Supplementary file Size Download File type/resource
GSM33134.CEL.gz 3.4 Mb (ftp)(http) CEL
GSM33134.EXP.gz 470 b (ftp)(http) EXP

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