GEO help: Mouse over screen elements for information.
Status
Public on Oct 27, 2004
Title
body wall 1
Sample type
RNA
Source name
BCBL-1 cell
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Gene expression profiling in BCBL-1 cell line. Gene expression profiling of three PEL cell lines compare to three Burkitt's lymphoma lines to figure out the changed genes under KSHV latent infection. RNA was extracted using RNAzol. Targets were produced using standard Affymetrix procedures from about 8ug of total RNA. Keywords = BCBL-1,KSHV,LANA,Gene expression profiling.
Submission date
Oct 24, 2004
Last update date
May 27, 2005
Contact name
Feng-Qi An
E-mail(s)
[email protected]
Phone
216-368-5543
Organization name
Case Western Reserve University
Department
Pathology
Lab
Edward Medof
Street address
10900 Euclid Avenue
City
Cleveland
State/province
OH
ZIP/Postal code
44106
Country
USA
Platform ID
GPL91
Series (1)
GSE1880
Role of LANA in KSHV latent infection
Data table header descriptions
ID_REF
Affymetrix HG-U95Av2 probe set ID
VALUE
'signal' a measure of the abundance of a transcript
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-MurIL2_at
112.1
A
0.852061
AFFX-MurIL10_at
135.3
A
0.41138
AFFX-MurIL4_at
270.4
A
0.327079
AFFX-MurFAS_at
112.1
A
0.548046
AFFX-BioB-5_at
792.6
A
0.108979
AFFX-BioB-M_at
3349
P
0.000972
AFFX-BioB-3_at
2866.5
P
0.009337
AFFX-BioC-5_at
9425
P
0.000199
AFFX-BioC-3_at
7829.6
P
0.000052
AFFX-BioDn-5_at
11507.5
P
0.00011
AFFX-BioDn-3_at
30508.8
P
0.000147
AFFX-CreX-5_at
38996.7
P
0.000066
AFFX-CreX-3_at
43346.9
P
0.000117
AFFX-BioB-5_st
137.3
A
0.52976
AFFX-BioB-M_st
158.9
A
0.860518
AFFX-BioB-3_st
316.4
A
0.760937
AFFX-BioC-5_st
117.3
A
0.893894
AFFX-BioC-3_st
110.2
A
0.794268
AFFX-BioDn-5_st
1336.5
A
0.205732
AFFX-BioDn-3_st
273.4
A
0.425962
Total number of rows: 12626 Table truncated, full table size 321 Kbytes .Supplementary file
Size
Download
File type/resource
GSM33134.CEL.gz
3.4 Mb
(ftp) (http)
CEL
GSM33134.EXP.gz
470 b
(ftp) (http)
EXP