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Status
Public on Oct 27, 2004
Title
body wall 2
Sample type
RNA
Source name
BC-3 cell
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Gene expression profiling in BC-3 cell line. Gene expression profiling of three PEL cell lines compare to three Burkitt's lymphoma lines to figure out the changed genes under KSHV latent infection. RNA was extracted using RNAzol. Targets were produced using standard Affymetrix procedures from about 8ug of total RNA. Keywords = BC-3,KSHV,LANA,Gene expression profiling.
Submission date
Oct 24, 2004
Last update date
May 27, 2005
Contact name
Feng-Qi An
E-mail(s)
[email protected]
Phone
216-368-5543
Organization name
Case Western Reserve University
Department
Pathology
Lab
Edward Medof
Street address
10900 Euclid Avenue
City
Cleveland
State/province
OH
ZIP/Postal code
44106
Country
USA
Platform ID
GPL91
Series (1)
GSE1880
Role of LANA in KSHV latent infection
Data table header descriptions
ID_REF
Affymetrix HG-U95Av2 probe set ID
VALUE
'signal' a measure of the abundance of a transcript
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-MurIL2_at
133.6
A
0.631562
AFFX-MurIL10_at
619
A
0.327079
AFFX-MurIL4_at
49
A
0.772364
AFFX-MurFAS_at
285.6
A
0.222254
AFFX-BioB-5_at
1739.5
P
0.018281
AFFX-BioB-M_at
3533.2
P
0.000147
AFFX-BioB-3_at
2754.5
P
0.006871
AFFX-BioC-5_at
9831.3
P
0.000195
AFFX-BioC-3_at
8300.1
P
0.000081
AFFX-BioDn-5_at
11125.1
P
0.00011
AFFX-BioDn-3_at
30770.2
P
0.000147
AFFX-CreX-5_at
51652.7
P
0.000066
AFFX-CreX-3_at
46669.9
P
0.000066
AFFX-BioB-5_st
618.5
A
0.131361
AFFX-BioB-M_st
222.9
A
0.544587
AFFX-BioB-3_st
320.9
A
0.876428
AFFX-BioC-5_st
163.5
A
0.860518
AFFX-BioC-3_st
56
A
0.737173
AFFX-BioDn-5_st
811.4
A
0.382599
AFFX-BioDn-3_st
1020.2
A
0.205732
Total number of rows: 12626 Table truncated, full table size 321 Kbytes .Supplementary file
Size
Download
File type/resource
GSM33135.CEL.gz
3.3 Mb
(ftp) (http)
CEL
GSM33135.EXP.gz
471 b
(ftp) (http)
EXP