NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM33135 Query DataSets for GSM33135
Status Public on Oct 27, 2004
Title body wall 2
Sample type RNA
 
Source name BC-3 cell
Organism Homo sapiens
Extracted molecule total RNA
 
Description Gene expression profiling in BC-3 cell line.
Gene expression profiling of three PEL cell lines compare to three Burkitt's lymphoma lines to figure out the changed genes under KSHV latent infection.
RNA was extracted using RNAzol. Targets were produced using standard Affymetrix procedures from about 8ug of total RNA.
Keywords = BC-3,KSHV,LANA,Gene expression profiling.
 
Submission date Oct 24, 2004
Last update date May 27, 2005
Contact name Feng-Qi An
E-mail(s) [email protected]
Phone 216-368-5543
Organization name Case Western Reserve University
Department Pathology
Lab Edward Medof
Street address 10900 Euclid Avenue
City Cleveland
State/province OH
ZIP/Postal code 44106
Country USA
 
Platform ID GPL91
Series (1)
GSE1880 Role of LANA in KSHV latent infection

Data table header descriptions
ID_REF Affymetrix HG-U95Av2 probe set ID
VALUE 'signal' a measure of the abundance of a transcript
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 133.6 A 0.631562
AFFX-MurIL10_at 619 A 0.327079
AFFX-MurIL4_at 49 A 0.772364
AFFX-MurFAS_at 285.6 A 0.222254
AFFX-BioB-5_at 1739.5 P 0.018281
AFFX-BioB-M_at 3533.2 P 0.000147
AFFX-BioB-3_at 2754.5 P 0.006871
AFFX-BioC-5_at 9831.3 P 0.000195
AFFX-BioC-3_at 8300.1 P 0.000081
AFFX-BioDn-5_at 11125.1 P 0.00011
AFFX-BioDn-3_at 30770.2 P 0.000147
AFFX-CreX-5_at 51652.7 P 0.000066
AFFX-CreX-3_at 46669.9 P 0.000066
AFFX-BioB-5_st 618.5 A 0.131361
AFFX-BioB-M_st 222.9 A 0.544587
AFFX-BioB-3_st 320.9 A 0.876428
AFFX-BioC-5_st 163.5 A 0.860518
AFFX-BioC-3_st 56 A 0.737173
AFFX-BioDn-5_st 811.4 A 0.382599
AFFX-BioDn-3_st 1020.2 A 0.205732

Total number of rows: 12626

Table truncated, full table size 321 Kbytes.




Supplementary file Size Download File type/resource
GSM33135.CEL.gz 3.3 Mb (ftp)(http) CEL
GSM33135.EXP.gz 471 b (ftp)(http) EXP

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap