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Status
Public on Oct 27, 2004
Title
body wall 4
Sample type
RNA
Source name
Raji cell
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Gene expression profiling in Raji cell line. Gene expression profiling of three PEL cell lines compare to three Burkitt's lymphoma lines to figure out the changed genes under KSHV latent infection. RNA was extracted using RNAzol. Targets were produced using standard Affymetrix procedures from about 8ug of total RNA. Keywords = Raji,KSHV,LANA,Gene expression profiling.
Submission date
Oct 24, 2004
Last update date
May 27, 2005
Contact name
Feng-Qi An
E-mail(s)
[email protected]
Phone
216-368-5543
Organization name
Case Western Reserve University
Department
Pathology
Lab
Edward Medof
Street address
10900 Euclid Avenue
City
Cleveland
State/province
OH
ZIP/Postal code
44106
Country
USA
Platform ID
GPL91
Series (1)
GSE1880
Role of LANA in KSHV latent infection
Data table header descriptions
ID_REF
Affymetrix HG-U95Av2 probe set ID
VALUE
'signal' a measure of the abundance of a transcript
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-MurIL2_at
119.8
A
0.860518
AFFX-MurIL10_at
108.2
A
0.645547
AFFX-MurIL4_at
139
A
0.123572
AFFX-MurFAS_at
125
A
0.425962
AFFX-BioB-5_at
2559
P
0.006871
AFFX-BioB-M_at
4293.4
P
0.000446
AFFX-BioB-3_at
2161.9
P
0.003595
AFFX-BioC-5_at
6649.6
P
0.000169
AFFX-BioC-3_at
5985
P
0.000052
AFFX-BioDn-5_at
7759.3
P
0.00007
AFFX-BioDn-3_at
36301.7
P
0.000147
AFFX-CreX-5_at
47652
P
0.000066
AFFX-CreX-3_at
47213.8
P
0.000176
AFFX-BioB-5_st
516.1
A
0.382599
AFFX-BioB-M_st
579.5
A
0.354453
AFFX-BioB-3_st
72.6
A
0.969024
AFFX-BioC-5_st
64.4
A
0.910522
AFFX-BioC-3_st
439.5
A
0.250796
AFFX-BioDn-5_st
1015.5
A
0.156732
AFFX-BioDn-3_st
679.1
A
0.313723
Total number of rows: 12626 Table truncated, full table size 321 Kbytes .Supplementary file
Size
Download
File type/resource
GSM33154.CEL.gz
3.4 Mb
(ftp) (http)
CEL
GSM33154.EXP.gz
466 b
(ftp) (http)
EXP