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Sample GSM33154 Query DataSets for GSM33154
Status Public on Oct 27, 2004
Title body wall 4
Sample type RNA
 
Source name Raji cell
Organism Homo sapiens
Extracted molecule total RNA
 
Description Gene expression profiling in Raji cell line.
Gene expression profiling of three PEL cell lines compare to three Burkitt's lymphoma lines to figure out the changed genes under KSHV latent infection.
RNA was extracted using RNAzol. Targets were produced using standard Affymetrix procedures from about 8ug of total RNA.
Keywords = Raji,KSHV,LANA,Gene expression profiling.
 
Submission date Oct 24, 2004
Last update date May 27, 2005
Contact name Feng-Qi An
E-mail(s) [email protected]
Phone 216-368-5543
Organization name Case Western Reserve University
Department Pathology
Lab Edward Medof
Street address 10900 Euclid Avenue
City Cleveland
State/province OH
ZIP/Postal code 44106
Country USA
 
Platform ID GPL91
Series (1)
GSE1880 Role of LANA in KSHV latent infection

Data table header descriptions
ID_REF Affymetrix HG-U95Av2 probe set ID
VALUE 'signal' a measure of the abundance of a transcript
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 119.8 A 0.860518
AFFX-MurIL10_at 108.2 A 0.645547
AFFX-MurIL4_at 139 A 0.123572
AFFX-MurFAS_at 125 A 0.425962
AFFX-BioB-5_at 2559 P 0.006871
AFFX-BioB-M_at 4293.4 P 0.000446
AFFX-BioB-3_at 2161.9 P 0.003595
AFFX-BioC-5_at 6649.6 P 0.000169
AFFX-BioC-3_at 5985 P 0.000052
AFFX-BioDn-5_at 7759.3 P 0.00007
AFFX-BioDn-3_at 36301.7 P 0.000147
AFFX-CreX-5_at 47652 P 0.000066
AFFX-CreX-3_at 47213.8 P 0.000176
AFFX-BioB-5_st 516.1 A 0.382599
AFFX-BioB-M_st 579.5 A 0.354453
AFFX-BioB-3_st 72.6 A 0.969024
AFFX-BioC-5_st 64.4 A 0.910522
AFFX-BioC-3_st 439.5 A 0.250796
AFFX-BioDn-5_st 1015.5 A 0.156732
AFFX-BioDn-3_st 679.1 A 0.313723

Total number of rows: 12626

Table truncated, full table size 321 Kbytes.




Supplementary file Size Download File type/resource
GSM33154.CEL.gz 3.4 Mb (ftp)(http) CEL
GSM33154.EXP.gz 466 b (ftp)(http) EXP

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