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Status
Public on Oct 27, 2004
Title
body wall 6
Sample type
RNA
Source name
DG75 cell
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Gene expression profiling in DG75 cell line. Gene expression profiling of three PEL cell lines compare to three Burkitt's lymphoma lines to figure out the changed genes under KSHV latent infection. RNA was extracted using RNAzol. Targets were produced using standard Affymetrix procedures from about 8ug of total RNA. Keywords = DG75,KSHV,LANA,Gene expression profiling.
Submission date
Oct 24, 2004
Last update date
May 27, 2005
Contact name
Feng-Qi An
E-mail(s)
[email protected]
Phone
216-368-5543
Organization name
Case Western Reserve University
Department
Pathology
Lab
Edward Medof
Street address
10900 Euclid Avenue
City
Cleveland
State/province
OH
ZIP/Postal code
44106
Country
USA
Platform ID
GPL91
Series (1)
GSE1880
Role of LANA in KSHV latent infection
Data table header descriptions
ID_REF
Affymetrix HG-U95Av2 probe set ID
VALUE
'signal' a measure of the abundance of a transcript
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
'detection p-value', p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-MurIL2_at
126.8
A
0.699394
AFFX-MurIL10_at
102.1
A
0.645547
AFFX-MurIL4_at
93.4
A
0.544587
AFFX-MurFAS_at
126.8
A
0.358609
AFFX-BioB-5_at
3021.7
P
0.012547
AFFX-BioB-M_at
4197.2
P
0.000147
AFFX-BioB-3_at
3228.6
P
0.006871
AFFX-BioC-5_at
9025.6
P
0.000232
AFFX-BioC-3_at
8616.1
P
0.00007
AFFX-BioDn-5_at
12343.8
P
0.000095
AFFX-BioDn-3_at
22160.9
P
0.000127
AFFX-CreX-5_at
46529.1
P
0.000066
AFFX-CreX-3_at
44027.9
P
0.000164
AFFX-BioB-5_st
459.5
A
0.368438
AFFX-BioB-M_st
704.7
A
0.382599
AFFX-BioB-3_st
267.7
A
0.724854
AFFX-BioC-5_st
145.4
A
0.904333
AFFX-BioC-3_st
59.8
A
0.699394
AFFX-BioDn-5_st
295.9
A
0.574038
AFFX-BioDn-3_st
420.3
A
0.41138
Total number of rows: 12626 Table truncated, full table size 321 Kbytes .Supplementary file
Size
Download
File type/resource
GSM33156.CEL.gz
3.4 Mb
(ftp) (http)
CEL
GSM33156.EXP.gz
458 b
(ftp) (http)
EXP