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Sample GSM33156 Query DataSets for GSM33156
Status Public on Oct 27, 2004
Title body wall 6
Sample type RNA
 
Source name DG75 cell
Organism Homo sapiens
Extracted molecule total RNA
 
Description Gene expression profiling in DG75 cell line.
Gene expression profiling of three PEL cell lines compare to three Burkitt's lymphoma lines to figure out the changed genes under KSHV latent infection.
RNA was extracted using RNAzol. Targets were produced using standard Affymetrix procedures from about 8ug of total RNA.
Keywords = DG75,KSHV,LANA,Gene expression profiling.
 
Submission date Oct 24, 2004
Last update date May 27, 2005
Contact name Feng-Qi An
E-mail(s) [email protected]
Phone 216-368-5543
Organization name Case Western Reserve University
Department Pathology
Lab Edward Medof
Street address 10900 Euclid Avenue
City Cleveland
State/province OH
ZIP/Postal code 44106
Country USA
 
Platform ID GPL91
Series (1)
GSE1880 Role of LANA in KSHV latent infection

Data table header descriptions
ID_REF Affymetrix HG-U95Av2 probe set ID
VALUE 'signal' a measure of the abundance of a transcript
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 126.8 A 0.699394
AFFX-MurIL10_at 102.1 A 0.645547
AFFX-MurIL4_at 93.4 A 0.544587
AFFX-MurFAS_at 126.8 A 0.358609
AFFX-BioB-5_at 3021.7 P 0.012547
AFFX-BioB-M_at 4197.2 P 0.000147
AFFX-BioB-3_at 3228.6 P 0.006871
AFFX-BioC-5_at 9025.6 P 0.000232
AFFX-BioC-3_at 8616.1 P 0.00007
AFFX-BioDn-5_at 12343.8 P 0.000095
AFFX-BioDn-3_at 22160.9 P 0.000127
AFFX-CreX-5_at 46529.1 P 0.000066
AFFX-CreX-3_at 44027.9 P 0.000164
AFFX-BioB-5_st 459.5 A 0.368438
AFFX-BioB-M_st 704.7 A 0.382599
AFFX-BioB-3_st 267.7 A 0.724854
AFFX-BioC-5_st 145.4 A 0.904333
AFFX-BioC-3_st 59.8 A 0.699394
AFFX-BioDn-5_st 295.9 A 0.574038
AFFX-BioDn-3_st 420.3 A 0.41138

Total number of rows: 12626

Table truncated, full table size 321 Kbytes.




Supplementary file Size Download File type/resource
GSM33156.CEL.gz 3.4 Mb (ftp)(http) CEL
GSM33156.EXP.gz 458 b (ftp)(http) EXP

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