|
| Status |
Public on Aug 11, 2018 |
| Title |
control 1 |
| Sample type |
SRA |
| |
|
| Source name |
Cyanobacterial axenic culture
|
| Organism |
Synechocystis sp. PCC 6803 |
| Characteristics |
substrain: GT-L
cultural vessel no.: 1,2,3
technical reps: 3
treatment: none
|
| Growth protocol |
BG-11 medium with 20 mM HEPES-NaOH pH 7.5; 100 µE·m2·s; 1.6% CO2 in a sterile air-gas mixture
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Mironov KS, Los DA. RNA isolation from Synechocystis, https://bio-protocol.org/e1428
Ion Total RNA-Seq Kit v2
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Ion Torrent PGM |
| |
|
| Description |
pooled 3 tech. reps.
alc.csv
|
| Data processing |
Torrent Suite 5.10.0
BBDuk
bwa mem v0.7.17
samtools v1.9
ReadXplorer v.2.2.2
DESeq2
Genome_build: ASM972v1
Supplementary_files_format_and_content: DESeq2 results for all genes
|
| |
|
| Submission date |
Aug 10, 2018 |
| Last update date |
Aug 12, 2018 |
| Contact name |
Kirill S. Mironov |
| E-mail(s) |
[email protected]
|
| Organization name |
K.A. Timiryazev Institute of Plant Physiology, Russian Academy of Science
|
| Department |
Molecular Biosystems
|
| Lab |
Cellular Regulation
|
| Street address |
Botanicheskaya str., 35
|
| City |
Moscow |
| ZIP/Postal code |
127276 |
| Country |
Russia |
| |
|
| Platform ID |
GPL23246 |
| Series (1) |
| GSE118423 |
Whole-transcriptome response of the cyanobacterium Synechocystis to hexan-1-ol |
|
| Relations |
| BioSample |
SAMN09809162 |
| SRA |
SRX4545889 |
