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Sample GSM336556 Query DataSets for GSM336556
Status Public on Oct 30, 2008
Title Putamen, MPTP day 6, replicate 5
Sample type RNA
 
Source name Putamen, MPTP day 6, replicate 5
Organism Macaca fascicularis
Characteristics State: Presymptomatic
Tissue: Putamen
Biomaterial provider Shared Ltd.
Treatment protocol Treated daily (9:00 am) with MPTP hydrochloride (0.2 mg/kg, i.v., Sigma, St. Louis, MO) dissolved in saline. Sacrificed in ketamine anesthesia by sodium pentobarbital overdose
Growth protocol Animals were housed in individual primate cages under controlled conditions of humidity (50 F 5%), temperature (24 F 18C) and light (12h light/12h dark cycles, time lights on 8:00 am), food and water were available ad libitum and animal care was supervised by veterinarians skilled in the healthcare and maintenance of nonhuman primates. Experiments were carried out in accordance with European Communities Council Directive of 24 November 1986 (86/609/EEC) for care of laboratory animals.
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA from the prefrontal cortex sample was performed according to the manufacturer's instructions.
Label biotin
Label protocol According to the standard protocol outlined in the Affymetrix GeneChip Expression Analysis Technical Manual
 
Hybridization protocol According to the manufacturer's instructions.
Scan protocol At 3-Am resolution using the GeneChip System confocal scanner (Hewlett-Packard, Santa Clara, CA) with a 488-nm emission and detection at 70 nm, controlled by Affymetrix Microarray Suite 5.0 (Affymetrix).
Description Putamen of MPTP treated macaque, day 6, replicate 5.
Data processing MAS5.0
 
Submission date Oct 24, 2008
Last update date Oct 29, 2008
Contact name Markus Storvik
Organization name University of Eastern Finland
Department Pharmacology
Street address University of Eastern Finland
City Kuopio
ZIP/Postal code 70211
Country Finland
 
Platform ID GPL96
Series (1)
GSE4550 Genes regulated in MPTP-treated macaques

Data table header descriptions
ID_REF
VALUE Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
ID_REF VALUE ABS_CALL
215754_at 124.3 A
206408_at 820.1 P
213421_x_at 80.2 A
215102_at 3.8 A
218706_s_at 56 A
208520_at 134.5 P
216548_x_at 86 A
212040_at 76.4 P
212035_s_at 126 A
220790_s_at 11.1 A
218334_at 247 P
217733_s_at 3993 P
204227_s_at 131.7 A
211062_s_at 21 A
206578_at 15.4 A
221936_x_at 11.4 A
215272_at 20.6 A
65472_at 5.4 A
200916_at 133.3 A
203254_s_at 104.3 A

Total number of rows: 22283

Table truncated, full table size 389 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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