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Sample GSM338223 Query DataSets for GSM338223
Status Public on Oct 30, 2008
Title Thalamus, MPTP day 12, replicate 3
Sample type RNA
 
Source name Thalamus, MPTP day 12, replicate 3
Organism Macaca fascicularis
Characteristics State: Presymptomatic
Tissue: Thalamus
Biomaterial provider Shared Ltd.
Treatment protocol Treated daily (9:00 am) with MPTP hydrochloride (0.2 mg/kg, i.v., Sigma, St. Louis, MO) dissolved in saline. Sacrificed in ketamine anesthesia by sodium pentobarbital overdose
Growth protocol Animals were housed in individual primate cages under controlled conditions of humidity (50 F 5%), temperature (24 F 18C) and light (12h light/12h dark cycles, time lights on 8:00 am), food and water were available ad libitum and animal care was supervised by veterinarians skilled in the healthcare and maintenance of nonhuman primates. Experiments were carried out in accordance with European Communities Council Directive of 24 November 1986 (86/609/EEC) for care of laboratory animals.
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA from the prefrontal cortex sample was performed according to the manufacturer's instructions.
Label biotin
Label protocol According to the standard protocol outlined in the Affymetrix GeneChip Expression Analysis Technical Manual
 
Hybridization protocol According to the manufacturer's instructions.
Scan protocol At 3-Am resolution using the GeneChip System confocal scanner (Hewlett-Packard, Santa Clara, CA) with a 488-nm emission and detection at 70 nm, controlled by Affymetrix Microarray Suite 5.0 (Affymetrix).
Description Thalamus, MPTP day 12, replicate 3
Data processing MAS5.0
 
Submission date Oct 29, 2008
Last update date Oct 29, 2008
Contact name Markus Storvik
Organization name University of Eastern Finland
Department Pharmacology
Street address University of Eastern Finland
City Kuopio
ZIP/Postal code 70211
Country Finland
 
Platform ID GPL96
Series (1)
GSE4550 Genes regulated in MPTP-treated macaques

Data table header descriptions
ID_REF
VALUE Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)

Data table
ID_REF VALUE ABS_CALL
215754_at 137.7 A
206408_at 607.7 P
213421_x_at 402.7 A
215102_at 38.9 A
218706_s_at 46.6 A
208520_at 331.3 A
216548_x_at 111.8 A
212040_at 110.7 A
212035_s_at 97.5 A
220790_s_at 88.2 A
218334_at 279.2 P
217733_s_at 2192 P
204227_s_at 581.8 A
211062_s_at 121 A
206578_at 54.8 A
221936_x_at 189.7 A
215272_at 142.2 A
65472_at 13.7 A
200916_at 79.2 A
203254_s_at 93 A

Total number of rows: 22283

Table truncated, full table size 397 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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