|
| Status |
Public on Jun 30, 2009 |
| Title |
01N3E_Oligo |
| Sample type |
RNA |
| |
|
| Source name |
oligoarthritis
|
| Organism |
Homo sapiens |
| Characteristics |
Peripheral blood mononuclear cells
TTF=65min
Race=White
Sex=Female
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Peripheral blood was drawn and PBMC were isollated over Ficoll. Samples were stored in Trizol at -80oC until extracted according to manufacturers directions.
|
| Label |
Biotin
|
| Label protocol |
NuGEN Ovation labeling
|
| |
|
| Hybridization protocol |
Standard Affymetrix hybridization protocol
|
| Scan protocol |
Standard scanning
|
| Description |
01N3E_Oligo
|
| Data processing |
Data were imported into GeneSpring 7.3 with RMA preprocessing and normalized to median of all samples. Normalized data were exported and subjected to Distance Weighted Discrimination (DWD) to account for any batch effects then reimported into Gene Spring and analyzed.
|
| |
|
| Submission date |
Nov 06, 2008 |
| Last update date |
Nov 14, 2018 |
| Contact name |
Michael Barnes |
| E-mail(s) |
[email protected]
|
| Phone |
513-636-1319
|
| Organization name |
Cincinnati Childrens Hospital Medical Center
|
| Department |
Rheumatology
|
| Lab |
Dr. David Glass
|
| Street address |
3333 Burnet Ave
|
| City |
Cincinnati |
| State/province |
OH |
| ZIP/Postal code |
45229 |
| Country |
USA |
| |
|
| Platform ID |
GPL570 |
| Series (3) |
| GSE13501 |
Subtype-specific peripheral blood gene expression profiles in recent onset JIA |
| GSE21521 |
Immature cell populations and an erythropoiesis gene expression signature in systemic juvenile idiopathic arthritis: Implications for pathogenesis |
| GSE26554 |
Genome-wide association analysis of juvenile idiopathic arthritis identifies a new susceptibility locus at chromosomal region 3q13. |
|
| Relations |
| Reanalyzed by |
GSE119087 |
| Reanalyzed by |
GSE122511 |
