|
| Status |
Public on Oct 09, 2018 |
| Title |
BDK3_2 |
| Sample type |
SRA |
| |
|
| Source name |
fruits
|
| Organism |
Morella rubra |
| Characteristics |
tissue: fruits
colour: pink
age: 3
|
| Extracted molecule |
total RNA |
| Extraction protocol |
flash frozen on dry ice, and RNA was harvested using Trizol reagent
RNA libraries were prepared for sequencing using standard Illumina protocols
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 4000 |
| |
|
| Data processing |
Raw data (raw reads) of fastq format were firstly processed through in-house perl scripts. In this step, clean data (clean reads) were obtained by removing reads containing adapter, reads containing ploy-N and low quality reads from raw data. At the same time, Q20, Q30 and GC content the clean data were calculated. All the downstream analyses were based on the clean data with high quality
|
| |
|
| Submission date |
Oct 08, 2018 |
| Last update date |
Oct 09, 2018 |
| Contact name |
Qihua Lin |
| E-mail(s) |
[email protected]
|
| Phone |
008613605948570
|
| Organization name |
Fruit Research Institute of Fujian Academy of Agricultural Sciences
|
| Department |
Tropical and subtropical fruit tree Research Laboratory
|
| Street address |
No.102, Xiyuan Road, Xindian Town, Jinan District
|
| City |
Fuzhou |
| State/province |
Fujian |
| ZIP/Postal code |
350013 |
| Country |
China |
| |
|
| Platform ID |
GPL25647 |
| Series (1) |
| GSE120925 |
RNA sequencing of red fruits of the Dongkui (DK) cultivar and the pink-white fruits of the Baidongkui (BDK) strain of Chinese bayberry |
|
| Relations |
| BioSample |
SAMN10216102 |
| SRA |
SRX4810352 |
