|
Status |
Public on Nov 05, 2018 |
Title |
Ova_S206 |
Sample type |
SRA |
|
|
Source name |
EpCAM+ DQ-Ova+ cultured intestinal epithelial cells from wild type mice [Fig. 2B] [Ova_S206]
|
Organism |
Mus musculus |
Characteristics |
cell type: WT mouse intestinal epithelial cells strain: C57BL/6 treatment: DQ-OVA time point: None genotype: WT
|
Extracted molecule |
total RNA |
Extraction protocol |
Full length RNAseq (SMART-Seq2) This sample represents a single cell processed with SMART-Seq2 protocol.
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina NextSeq 500 |
|
|
Description |
Ova_All_TPM.mtx
|
Data processing |
Full-length RNAseq (SMART-Seq2) Tophat Bowtie RSEM PCA (prcomp in R) kNN-based graph clustering (R code) Genome_build: mm10 Supplementary_files_format_and_content: Transcripts per million (TPM) expression values (derived from RSEM for each gene (rows) in each cell (columns).
|
|
|
Submission date |
Nov 05, 2018 |
Last update date |
Apr 05, 2019 |
Contact name |
Adam Haber |
E-mail(s) |
[email protected]
|
Organization name |
Harvard T. H. Chan School of Public Health
|
Street address |
665 Huntington Ave, HSPH Building 1, Room 305
|
City |
Boston |
State/province |
Massachusetts |
ZIP/Postal code |
02115 |
Country |
USA |
|
|
Platform ID |
GPL19057 |
Series (1) |
GSE106510 |
T helper cells modulate intestinal stem cell renewal and differentiation |
|
Relations |
BioSample |
SAMN10379169 |
SRA |
SRX4978825 |