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Sample GSM347811 Query DataSets for GSM347811
Status Public on Aug 29, 2009
Title Control, biological replicate 2, technical replicate 2
Sample type RNA
 
Source name Rhesus hippocampus
Organism Macaca mulatta
Characteristics Gender: Male
Age (yrs): 6
Anti-CD8 Treatment: No
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using Trizol Reagent per manufacturer's instructions.
Label biotin
Label protocol Ambion MessageAmp Biotin II Enhance
 
Hybridization protocol Standard Affymetrix 49 Format Hybridization with 15 ug of fragmented cRNA
Scan protocol Affymetrix EukGE-WS2v4
Description Gene expression from control monkey hippocampus
Data processing CEL files were analyzed with the Bioconductor implementation of the RMA (Robust Multichip Average) algorithm).
 
Submission date Dec 04, 2008
Last update date Aug 29, 2009
Contact name Howard Fox
E-mail(s) [email protected]
Phone 402 559-4821
Fax 402 559-7495
Organization name University of Nebraska Medical Center
Department Pharmacology and Experimental Neuroscience
Street address 985800 Nebraska Medical Center - DRC 3008
City Omaha
State/province NE
ZIP/Postal code 68198
Country USA
 
Platform ID GPL3535
Series (1)
GSE13824 SIV Encephalitis and Uninfected Control: Hippocampus Expression Profiles

Data table header descriptions
ID_REF
VALUE RMA expression values.

Data table
ID_REF VALUE
AFFX-BioB-3_at 8.19613893862044
AFFX-BioB-5_at 8.2071734721255
AFFX-BioB-M_at 8.73700112193155
AFFX-BioC-3_at 9.3611942047202
AFFX-BioC-5_at 9.08531939597502
AFFX-BioDn-3_at 11.5702023464683
AFFX-BioDn-5_at 10.6217887663677
AFFX-CreX-3_at 13.1522086681824
AFFX-CreX-5_at 13.0084370600768
AFFX-DapX-3_at 12.2724788254026
AFFX-DapX-5_at 10.2226986843346
AFFX-DapX-M_at 11.6259814405896
AFFX-LysX-3_at 9.47725628869086
AFFX-LysX-5_at 8.10726572581912
AFFX-LysX-M_at 8.88531651217279
AFFX-Mmu-actin-3_s_at 12.5966587504557
AFFX-Mmu-actin-5_at 12.6347162602294
AFFX-Mmu-actin-M_at 12.0307945618993
AFFX-Mmu-actin-M_x_at 12.5568606723945
AFFX-Mmu-ef1a-3_x_at 13.1360226444271

Total number of rows: 52865

Table truncated, full table size 1982 Kbytes.




Supplementary file Size Download File type/resource
GSM347811.CEL.gz 7.9 Mb (ftp)(http) CEL
Processed data included within Sample table

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