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Sample GSM349725 Query DataSets for GSM349725
Status Public on Feb 20, 2009
Title BC1 TC_NOC
Sample type RNA
 
Source name T cells
Organism Homo sapiens
Characteristics >95% CD3+ T cells negatively isolated with Dynal kit
Treatment protocol Stimulated with Nitric Oxide (NOC-18) 600 uM 24hr
Extracted molecule total RNA
Extraction protocol RNeasy (Qiagen)
Label Biotin
Label protocol Standard Affymetrix Two Cycle IVT Protocol
 
Hybridization protocol Standard Affymetrix FS450_0001
Scan protocol Affymetrix GeneChip Scanner 7G Plus
Description Additional details provided in accompanying manuscript, BC1TC_NOC
Data processing MAS5/GCOS
 
Submission date Dec 09, 2008
Last update date Aug 28, 2018
Contact name Frank A Middleton
E-mail(s) [email protected]
Phone 315-464-7721
Organization name SUNY Upstate Medical Univ
Department Neuroscience and Physiology
Street address 505 Irving Avenue
City Syracuse
State/province NY
ZIP/Postal code 13210
Country USA
 
Platform ID GPL570
Series (1)
GSE13887 Activation of mTOR controls the loss of TCRζ in lupus T cells through HRES-1/Rab4-regulated lysosomal degradation
Relations
Reanalyzed by GSE119087

Data table header descriptions
ID_REF
VALUE Signal Value
ABS_CALL Present/Absent Call
DETECTION P-VALUE Detection P Value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 3444.08 P 0.000662269
AFFX-BioB-M_at 4429.16 P 5.16732e-05
AFFX-BioB-3_at 2774.01 P 4.42873e-05
AFFX-BioC-5_at 7984.98 P 0.000340305
AFFX-BioC-3_at 8127.72 P 4.42873e-05
AFFX-BioDn-5_at 12720.8 P 4.42873e-05
AFFX-BioDn-3_at 31912.9 P 9.4506e-05
AFFX-CreX-5_at 74897.1 P 4.42873e-05
AFFX-CreX-3_at 103951 P 4.42873e-05
AFFX-DapX-5_at 55.4719 A 0.737173
AFFX-DapX-M_at 188.615 A 0.354441
AFFX-DapX-3_at 16.5524 A 0.993129
AFFX-LysX-5_at 120.748 A 0.287743
AFFX-LysX-M_at 104.866 A 0.425962
AFFX-LysX-3_at 83.7845 A 0.195266
AFFX-PheX-5_at 52.5885 A 0.645547
AFFX-PheX-M_at 43.6706 A 0.783476
AFFX-PheX-3_at 102.496 A 0.440646
AFFX-ThrX-5_at 28.5023 A 0.804734
AFFX-ThrX-M_at 9.29359 A 0.904333

Total number of rows: 54675

Table truncated, full table size 1606 Kbytes.




Supplementary file Size Download File type/resource
GSM349725.CEL.gz 4.6 Mb (ftp)(http) CEL
GSM349725.CHP.gz 295.1 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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