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Sample GSM35224 Query DataSets for GSM35224
Status Public on Dec 02, 2005
Title 133c: Liver-spleen
Sample type RNA
 
Channel 1
Source name Liver
Organism Rattus norvegicus
Extracted molecule total RNA
 
Channel 2
Source name Spleen
Organism Rattus norvegicus
Extracted molecule total RNA
 
 
Description Normal organ tissue cDNA hybridizations.
 
Submission date Nov 12, 2004
Last update date May 29, 2005
Contact name Zhongming Chen
E-mail(s) [email protected]
Phone 405-744-0329
URL http://www.cvm.okstate.edu/research/Facilities/LungBiologyLab/
Organization name Oklahoma State University
Department Deptment of Physiological Sciences
Lab Lin Liu Lab
Street address 264 McElroy Hall
City Stillwater
State/province OK
ZIP/Postal code 74078
Country USA
 
Platform ID GPL1699
Series (1)
GSE1963 Parallel Hybridizations of six organs

Data table header descriptions
ID_REF
VALUE Log2 ratio of CH1_MEAN vs. CH2_MEAN
CH1_MEAN Green (Cy3): Linearly scaled F3 mean: percentile 5 to 0, percentile 95 to 255
CH2_MEAN Red (Alexa 647): Linearly scaled F5 mean: percentile 5 to 0, percentile 95 to 255
F3 Mean - B3 F3=Cy3 or green channel
F5 Mean - B5 F5=Alexa 647 or red channel
F3 Mean
F3 Median
F3 Median - B3
F3 SD
F3 Total Intensity
F5 % Sat.
F Pixels
F3 % Sat.
F5 Mean
F5 Median
F5 Median - B5
F5 SD
F5 Total Intensity
B Pixels
B3 Mean
B3 Median
B3 SD
B5 Mean
B5 Median
B5 SD
Flags Spot quality from GenPix
Index
Log Ratio (5/3)
Mean of Ratios (5/3)
Median of Ratios (5/3)
Ratio of Means (5/3)
Ratio of Medians (5/3)
Ratios SD (5/3)
Rgn Ratio (5/3)
Rgn R? (5/3)
SNR 3
SNR 5
Sum of Means
Sum of Medians

Data table
ID_REF VALUE CH1_MEAN CH2_MEAN F3 Mean - B3 F5 Mean - B5 F3 Mean F3 Median F3 Median - B3 F3 SD F3 Total Intensity F5 % Sat. F Pixels F3 % Sat. F5 Mean F5 Median F5 Median - B5 F5 SD F5 Total Intensity B Pixels B3 Mean B3 Median B3 SD B5 Mean B5 Median B5 SD Flags Index Log Ratio (5/3) Mean of Ratios (5/3) Median of Ratios (5/3) Ratio of Means (5/3) Ratio of Medians (5/3) Ratios SD (5/3) Rgn Ratio (5/3) Rgn R? (5/3) SNR 3 SNR 5 Sum of Means Sum of Medians
AF007818 -1.447138342 12.27 4.5 19 12 185 160 -6 89 28891 0 156 0 135 127 4 58 21056 692 183 166 97 137 123 63 -50 20001 0 0.555 0.549 0.632 -0.667 3.727 0.071 0.003 0.021 -0.032 31 -2
AF027331 -1.343652866 11.04 4.35 32 28 178 174 28 83 27839 0 156 0 134 127 21 45 20851 512 168 146 89 123 106 60 -50 20002 -0.415 0.565 0.488 0.875 0.75 4.768 52.381 0 0.112 0.183 60 49
AF032925 -1.953706348 11.04 2.85 52 21 178 164 38 82 27732 0 156 0 124 114 11 56 19399 641 147 126 72 116 103 50 -50 20003 -1.788 0.643 0.667 0.404 0.289 4.598 18.772 0.001 0.431 0.16 73 49
AF046886 -0.1662242 13.14 11.71 69 83 190 180 59 92 15187 0 80 0 183 169 69 83 14648 427 144 121 74 111 100 47 0 20004 0.226 0.832 0.975 1.203 1.169 5.065 0.294 0.022 0.622 1.532 152 128
S79292 0.10173971 18.75 20.12 96 142 222 194 68 123 17773 0 80 0 239 215 118 122 19084 402 144 126 71 108 97 49 0 20005 0.795 1.387 1.662 1.479 1.735 4.598 0.806 0.05 1.099 2.673 238 186
NM_053986 -2.719814011 10.87 1.65 56 22 177 150 29 85 27598 0 156 0 116 104 10 45 18158 583 145 121 108 113 94 132 -50 20006 -1.536 0.457 0.5 0.393 0.345 4.147 0.183 0.027 0.296 0.023 78 39
NM_019360 -0.18829194 245.35 215.33 1391 1441 1515 1318 1194 844 236344 0 156 0 1539 1359 1261 843 240102 592 145 124 106 115 98 129 0 20007 0.079 1.052 1.048 1.036 1.056 1.472 1.031 0.868 12.925 11.039 2832 2455
M35602 -5.19585177 176.3 4.81 998 40 1121 1083 960 400 134464 0 120 0 137 129 32 52 16491 546 141 123 73 108 97 41 0 20008 -4.907 0.056 0.071 0.04 0.033 2.043 0.028 0.084 13.425 0.707 1038 992
M64391 -0.929990279 5.43 2.85 34 29 146 126 14 69 22708 0 156 0 124 114 19 48 19373 588 133 112 69 107 95 41 -50 20009 0.441 0.823 0.902 0.853 1.357 4.369 0.002 0 0.188 0.415 63 33
S48142 -2.94673086 7.71 1 50 12 159 142 33 85 24745 0 156 0 105 91 -2 43 16316 531 128 109 63 105 93 38 -50 20010 0 0.648 0.703 0.24 -0.061 4.575 18.114 0.005 0.492 0 62 31
AB050745 -2.828947453 12.79 1.8 75 21 188 175 62 92 29301 0 156 0 117 104 8 48 18251 642 134 113 66 113 96 56 -50 20011 -2.954 0.568 0.485 0.28 0.129 4.679 134.53 0 0.818 0.071 96 70
NM_030838 3.936903165 16.65 255 95 3901 210 179 64 95 16814 0 80 0 4002 4004 3903 835 320168 416 135 115 67 129 101 97 0 20012 5.93 31.165 30.171 41.063 60.984 1.887 59.822 0.115 1.119 39.928 3996 3967
NM_017026 -0.604224403 7.54 4.96 48 44 158 139 29 85 24661 0 156 0 138 126 32 61 21584 635 132 110 66 114 94 76 -50 20013 0.142 0.735 0.636 0.917 1.103 3.915 2.245 0.013 0.394 0.316 92 61
NM_053295 0.467404673 7.71 10.66 58 81 159 137 36 97 19130 0 120 0 176 161 66 79 21143 478 125 101 99 106 95 58 0 20014 0.874 1.007 0.965 1.397 1.833 3.423 0.503 0.042 0.343 1.207 139 102
NM_023101 1 2.63 5.26 32 41 130 111 13 61 20285 0 156 0 140 124 25 67 21910 575 115 98 56 108 99 40 -50 20015 0.943 0.83 0.717 1.281 1.923 5.429 0.618 0.009 0.268 0.8 73 38
U60562 1.514573173 1.05 3 28 34 121 103 10 63 18924 0 156 0 125 114 23 47 19511 599 116 93 64 102 91 39 -50 20016 1.202 0.924 0.841 1.214 2.3 4.994 0.087 0.004 0.078 0.59 62 33
NM_012873 0.176143239 12.09 13.66 92 107 184 173 81 95 22038 0 120 0 196 188 99 88 23473 485 113 92 61 100 89 36 0 20017 0.29 1.107 1.12 1.163 1.222 4.171 0.637 0.071 1.164 2.667 199 180
M25823 0.818407544 6.13 10.81 63 83 150 99 12 347 23341 0 156 0 177 115 21 538 27666 702 106 87 52 104 94 43 -50 20018 0.807 1.039 1 1.317 1.75 3.94 1.662 0.823 0.846 1.698 146 33
NM_019323 1.582219734 3.51 10.51 47 83 135 123 35 71 10798 0 80 0 175 143 51 130 13973 400 112 88 69 103 92 48 0 20019 0.543 1.097 1.045 1.766 1.457 4.651 7.05 0.006 0.333 1.5 130 86
NM_053655 0 1 1 20 13 108 88 0 55 16840 0 156 0 102 90 1 40 15941 600 106 88 61 101 89 44 -50 20020 16.61 0.907 0.925 0.65 100000 4.247 0.038 0.001 0.033 0.023 33 1

Total number of rows: 10000

Table truncated, full table size 1856 Kbytes.




Supplementary data files not provided

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