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GEO accession:
Sample GSM35224
Query DataSets for GSM35224
Status
Public on Dec 02, 2005
Title
133c: Liver-spleen
Sample type
RNA
Channel 1
Source name
Liver
Organism
Rattus norvegicus
Extracted molecule
total RNA
Channel 2
Source name
Spleen
Organism
Rattus norvegicus
Extracted molecule
total RNA
Description
Normal organ tissue cDNA hybridizations.
Submission date
Nov 12, 2004
Last update date
May 29, 2005
Contact name
Zhongming Chen
E-mail(s)
[email protected]
Phone
405-744-0329
URL
http://www.cvm.okstate.edu/research/Facilities/LungBiologyLab/
Organization name
Oklahoma State University
Department
Deptment of Physiological Sciences
Lab
Lin Liu Lab
Street address
264 McElroy Hall
City
Stillwater
State/province
OK
ZIP/Postal code
74078
Country
USA
Platform ID
GPL1699
Series (1)
GSE1963
Parallel Hybridizations of six organs
Data table header descriptions
ID_REF
VALUE
Log2 ratio of CH1_MEAN vs. CH2_MEAN
CH1_MEAN
Green (Cy3): Linearly scaled F3 mean: percentile 5 to 0, percentile 95 to 255
CH2_MEAN
Red (Alexa 647): Linearly scaled F5 mean: percentile 5 to 0, percentile 95 to 255
F3 Mean - B3
F3=Cy3 or green channel
F5 Mean - B5
F5=Alexa 647 or red channel
F3 Mean
F3 Median
F3 Median - B3
F3 SD
F3 Total Intensity
F5 % Sat.
F Pixels
F3 % Sat.
F5 Mean
F5 Median
F5 Median - B5
F5 SD
F5 Total Intensity
B Pixels
B3 Mean
B3 Median
B3 SD
B5 Mean
B5 Median
B5 SD
Flags
Spot quality from GenPix
Index
Log Ratio (5/3)
Mean of Ratios (5/3)
Median of Ratios (5/3)
Ratio of Means (5/3)
Ratio of Medians (5/3)
Ratios SD (5/3)
Rgn Ratio (5/3)
Rgn R? (5/3)
SNR 3
SNR 5
Sum of Means
Sum of Medians
Data table
ID_REF
VALUE
CH1_MEAN
CH2_MEAN
F3 Mean - B3
F5 Mean - B5
F3 Mean
F3 Median
F3 Median - B3
F3 SD
F3 Total Intensity
F5 % Sat.
F Pixels
F3 % Sat.
F5 Mean
F5 Median
F5 Median - B5
F5 SD
F5 Total Intensity
B Pixels
B3 Mean
B3 Median
B3 SD
B5 Mean
B5 Median
B5 SD
Flags
Index
Log Ratio (5/3)
Mean of Ratios (5/3)
Median of Ratios (5/3)
Ratio of Means (5/3)
Ratio of Medians (5/3)
Ratios SD (5/3)
Rgn Ratio (5/3)
Rgn R? (5/3)
SNR 3
SNR 5
Sum of Means
Sum of Medians
AF007818
-1.447138342
12.27
4.5
19
12
185
160
-6
89
28891
0
156
0
135
127
4
58
21056
692
183
166
97
137
123
63
-50
20001
0
0.555
0.549
0.632
-0.667
3.727
0.071
0.003
0.021
-0.032
31
-2
AF027331
-1.343652866
11.04
4.35
32
28
178
174
28
83
27839
0
156
0
134
127
21
45
20851
512
168
146
89
123
106
60
-50
20002
-0.415
0.565
0.488
0.875
0.75
4.768
52.381
0
0.112
0.183
60
49
AF032925
-1.953706348
11.04
2.85
52
21
178
164
38
82
27732
0
156
0
124
114
11
56
19399
641
147
126
72
116
103
50
-50
20003
-1.788
0.643
0.667
0.404
0.289
4.598
18.772
0.001
0.431
0.16
73
49
AF046886
-0.1662242
13.14
11.71
69
83
190
180
59
92
15187
0
80
0
183
169
69
83
14648
427
144
121
74
111
100
47
0
20004
0.226
0.832
0.975
1.203
1.169
5.065
0.294
0.022
0.622
1.532
152
128
S79292
0.10173971
18.75
20.12
96
142
222
194
68
123
17773
0
80
0
239
215
118
122
19084
402
144
126
71
108
97
49
0
20005
0.795
1.387
1.662
1.479
1.735
4.598
0.806
0.05
1.099
2.673
238
186
NM_053986
-2.719814011
10.87
1.65
56
22
177
150
29
85
27598
0
156
0
116
104
10
45
18158
583
145
121
108
113
94
132
-50
20006
-1.536
0.457
0.5
0.393
0.345
4.147
0.183
0.027
0.296
0.023
78
39
NM_019360
-0.18829194
245.35
215.33
1391
1441
1515
1318
1194
844
236344
0
156
0
1539
1359
1261
843
240102
592
145
124
106
115
98
129
0
20007
0.079
1.052
1.048
1.036
1.056
1.472
1.031
0.868
12.925
11.039
2832
2455
M35602
-5.19585177
176.3
4.81
998
40
1121
1083
960
400
134464
0
120
0
137
129
32
52
16491
546
141
123
73
108
97
41
0
20008
-4.907
0.056
0.071
0.04
0.033
2.043
0.028
0.084
13.425
0.707
1038
992
M64391
-0.929990279
5.43
2.85
34
29
146
126
14
69
22708
0
156
0
124
114
19
48
19373
588
133
112
69
107
95
41
-50
20009
0.441
0.823
0.902
0.853
1.357
4.369
0.002
0
0.188
0.415
63
33
S48142
-2.94673086
7.71
1
50
12
159
142
33
85
24745
0
156
0
105
91
-2
43
16316
531
128
109
63
105
93
38
-50
20010
0
0.648
0.703
0.24
-0.061
4.575
18.114
0.005
0.492
0
62
31
AB050745
-2.828947453
12.79
1.8
75
21
188
175
62
92
29301
0
156
0
117
104
8
48
18251
642
134
113
66
113
96
56
-50
20011
-2.954
0.568
0.485
0.28
0.129
4.679
134.53
0
0.818
0.071
96
70
NM_030838
3.936903165
16.65
255
95
3901
210
179
64
95
16814
0
80
0
4002
4004
3903
835
320168
416
135
115
67
129
101
97
0
20012
5.93
31.165
30.171
41.063
60.984
1.887
59.822
0.115
1.119
39.928
3996
3967
NM_017026
-0.604224403
7.54
4.96
48
44
158
139
29
85
24661
0
156
0
138
126
32
61
21584
635
132
110
66
114
94
76
-50
20013
0.142
0.735
0.636
0.917
1.103
3.915
2.245
0.013
0.394
0.316
92
61
NM_053295
0.467404673
7.71
10.66
58
81
159
137
36
97
19130
0
120
0
176
161
66
79
21143
478
125
101
99
106
95
58
0
20014
0.874
1.007
0.965
1.397
1.833
3.423
0.503
0.042
0.343
1.207
139
102
NM_023101
1
2.63
5.26
32
41
130
111
13
61
20285
0
156
0
140
124
25
67
21910
575
115
98
56
108
99
40
-50
20015
0.943
0.83
0.717
1.281
1.923
5.429
0.618
0.009
0.268
0.8
73
38
U60562
1.514573173
1.05
3
28
34
121
103
10
63
18924
0
156
0
125
114
23
47
19511
599
116
93
64
102
91
39
-50
20016
1.202
0.924
0.841
1.214
2.3
4.994
0.087
0.004
0.078
0.59
62
33
NM_012873
0.176143239
12.09
13.66
92
107
184
173
81
95
22038
0
120
0
196
188
99
88
23473
485
113
92
61
100
89
36
0
20017
0.29
1.107
1.12
1.163
1.222
4.171
0.637
0.071
1.164
2.667
199
180
M25823
0.818407544
6.13
10.81
63
83
150
99
12
347
23341
0
156
0
177
115
21
538
27666
702
106
87
52
104
94
43
-50
20018
0.807
1.039
1
1.317
1.75
3.94
1.662
0.823
0.846
1.698
146
33
NM_019323
1.582219734
3.51
10.51
47
83
135
123
35
71
10798
0
80
0
175
143
51
130
13973
400
112
88
69
103
92
48
0
20019
0.543
1.097
1.045
1.766
1.457
4.651
7.05
0.006
0.333
1.5
130
86
NM_053655
0
1
1
20
13
108
88
0
55
16840
0
156
0
102
90
1
40
15941
600
106
88
61
101
89
44
-50
20020
16.61
0.907
0.925
0.65
100000
4.247
0.038
0.001
0.033
0.023
33
1
Total number of rows:
10000
Table truncated, full table size
1856 Kbytes
.
Supplementary data files not provided
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