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Sample GSM35228 Query DataSets for GSM35228
Status Public on Dec 02, 2005
Title 135a: Spleen-heart
Sample type RNA
 
Channel 1
Source name Spleen
Organism Rattus norvegicus
Extracted molecule total RNA
 
Channel 2
Source name Heart
Organism Rattus norvegicus
Extracted molecule total RNA
 
 
Description Normal organ tissue cDNA hybridizations.
 
Submission date Nov 12, 2004
Last update date May 29, 2005
Contact name Zhongming Chen
E-mail(s) [email protected]
Phone 405-744-0329
URL http://www.cvm.okstate.edu/research/Facilities/LungBiologyLab/
Organization name Oklahoma State University
Department Deptment of Physiological Sciences
Lab Lin Liu Lab
Street address 264 McElroy Hall
City Stillwater
State/province OK
ZIP/Postal code 74078
Country USA
 
Platform ID GPL1699
Series (1)
GSE1963 Parallel Hybridizations of six organs

Data table header descriptions
ID_REF
VALUE Log2 ratio of CH1_MEAN vs. CH2_MEAN
CH1_MEAN Green (Cy3): Linearly scaled F3 mean: percentile 5 to 0, percentile 95 to 255
CH2_MEAN Red (Alexa 647): Linearly scaled F5 mean: percentile 5 to 0, percentile 95 to 255
F3 Mean - B3 F3=Cy3 or green channel
F5 Mean - B5 F5=Alexa 647 or red channel
F3 Mean
F3 Median
F3 Median - B3
F3 SD
F3 Total Intensity
F5 % Sat.
F Pixels
F3 % Sat.
F5 Mean
F5 Median
F5 Median - B5
F5 SD
F5 Total Intensity
B Pixels
B3 Mean
B3 Median
B3 SD
B5 Mean
B5 Median
B5 SD
Flags Spot quality from GenPix
Index
Log Ratio (5/3)
Mean of Ratios (5/3)
Median of Ratios (5/3)
Ratio of Means (5/3)
Ratio of Medians (5/3)
Ratios SD (5/3)
Rgn Ratio (5/3)
Rgn R? (5/3)
SNR 3
SNR 5
Sum of Means
Sum of Medians

Data table
ID_REF VALUE CH1_MEAN CH2_MEAN F3 Mean - B3 F5 Mean - B5 F3 Mean F3 Median F3 Median - B3 F3 SD F3 Total Intensity F5 % Sat. F Pixels F3 % Sat. F5 Mean F5 Median F5 Median - B5 F5 SD F5 Total Intensity B Pixels B3 Mean B3 Median B3 SD B5 Mean B5 Median B5 SD Flags Index Log Ratio (5/3) Mean of Ratios (5/3) Median of Ratios (5/3) Ratio of Means (5/3) Ratio of Medians (5/3) Ratios SD (5/3) Rgn Ratio (5/3) Rgn R? (5/3) SNR 3 SNR 5 Sum of Means Sum of Medians
AF007818 2.317549654 1.32 6.58 28 13 130 109 7 54 20240 0 156 0 127 116 2 44 19861 692 123 102 53 123 114 41 -50 1 -1.807 1.036 1.25 0.464 0.286 4.408 4.903 0.007 0.132 0.098 41 9
AF027331 0.986904342 1.66 3.29 26 7 131 114 9 55 20473 0 156 0 118 106 -5 36 18367 512 158 105 701 144 111 396 -50 2 0 1.034 1.044 0.269 -0.556 3.896 0.559 0.982 -0.039 -0.066 33 4
AF032925 0.235190773 4.97 5.85 37 19 141 111 7 75 22003 0 156 0 125 115 9 41 19449 523 156 104 694 137 106 392 -50 3 0.363 0.808 0.696 0.514 1.286 4.437 0.698 0.469 -0.022 -0.031 56 16
AF046886 2.37064338 0.99 5.12 23 20 129 105 -1 57 20057 0 156 0 123 107 4 43 19170 562 127 106 56 114 103 38 -50 4 0 0.633 0.629 0.87 -4 4.299 0.167 0.015 0.036 0.237 43 3
S79292 -0.296916207 6.29 5.12 39 18 145 126 20 71 22566 0 156 0 123 109 4 54 19246 553 212 106 1722 161 105 724 -50 5 -2.322 0.689 0.625 0.462 0.2 4.225 0.413 0.947 -0.039 -0.052 57 24
NM_053986 -0.008743633 3.31 3.29 30 8 136 109 3 66 21180 0 156 0 118 108 -2 36 18333 496 218 106 1818 169 110 764 -50 6 0 0.733 0.801 0.267 -0.667 3.817 0.412 0.949 -0.045 -0.067 38 1
NM_019360 2.63180798 37.42 231.93 135 641 239 207 103 112 37315 0 156 0 743 723 621 275 115910 486 122 104 53 116 102 42 0 7 2.592 5.855 4.78 4.748 6.029 2.887 6.1 0.278 2.208 14.929 776 724
M35602 -0.703468682 5.96 3.66 40 19 144 111 7 93 22390 0 156 0 119 105 5 40 18490 573 125 104 56 113 100 40 -50 8 -0.485 0.741 0.733 0.475 0.714 4.314 0.141 0.027 0.339 0.15 59 12
M64391 0.657718843 4.64 7.32 37 28 140 120 17 69 21848 0 156 0 129 118 17 55 20179 512 126 103 59 111 101 35 -50 9 0 0.889 0.947 0.757 1 3.843 0.313 0.053 0.237 0.514 65 34
S48142 0.137503524 1 1.1 20 11 122 100 -2 53 19051 0 156 0 112 103 2 34 17457 512 125 102 58 112 101 35 -50 10 0 0.766 0.778 0.55 -1 4.015 0.171 0.069 -0.052 0 31 0
AB050745 0.819717423 1.66 2.93 27 13 131 112 8 64 20443 0 156 0 117 105 1 40 18223 522 125 104 55 114 104 40 -50 11 -3 0.834 0.912 0.481 0.125 2.856 14.588 0.003 0.109 0.075 40 9
NM_030838 5.588361077 5.3 255 37 732 142 131 26 58 17061 0 120 0 833 847 746 358 99932 399 125 105 51 112 101 41 0 12 4.843 11.724 13.426 19.784 28.692 2.413 49.317 0.021 0.333 17.585 769 772
NM_017026 0.728948577 3.97 6.58 39 25 138 120 21 64 21556 0 156 0 127 111 9 54 19888 577 119 99 48 112 102 36 -50 13 -1.222 0.608 0.682 0.641 0.429 5.322 0.081 0.003 0.396 0.417 64 30
NM_053295 -0.733007581 3.64 2.19 34 10 137 122 19 67 21406 0 156 0 115 108 3 41 17979 512 126 103 63 118 105 47 -50 14 -2.663 0.839 0.929 0.294 0.158 4.279 0.342 0.092 0.175 -0.064 44 22
NM_023101 0.819717423 1.66 2.93 26 14 131 116 11 57 20420 0 156 0 117 104 1 38 18277 517 128 105 66 116 103 47 -50 15 -3.459 0.876 1.058 0.538 0.091 3.401 0.354 0.083 0.045 0.021 40 12
U60562 1.515174171 9.6 27.44 55 81 155 140 40 79 18632 0 120 0 184 164 61 77 22105 373 121 100 53 113 103 46 0 16 0.609 0.992 1.158 1.473 1.525 4.807 1.025 0.019 0.642 1.543 136 101
NM_012873 -1.418555411 41.06 15.36 147 46 250 244 141 115 30044 0 120 0 151 140 35 66 18101 531 125 103 59 115 105 45 0 17 -2.01 0.422 0.469 0.313 0.248 3.84 0.214 0.069 2.119 0.8 193 176
M25823 -3.161234041 3.31 0.37 34 10 136 116 14 65 21191 0 156 0 110 102 2 33 17231 703 123 102 76 112 100 42 -50 18 -2.807 0.679 0.684 0.294 0.143 2.854 0.065 0.007 0.171 -0.048 44 16
NM_019323 0.598881002 8.94 13.54 47 45 153 139 33 68 7949 0 52 0 146 127 26 57 7615 272 124 106 50 114 101 49 0 19 -0.344 1.04 0.978 0.957 0.788 3.786 0.237 0.001 0.58 0.653 92 59
NM_053655 2.13422094 1 4.39 18 16 124 112 6 50 19276 0 156 0 121 111 6 44 18841 607 130 106 69 116 105 41 -50 20 0 0.852 0.8 0.889 1 3.521 30.217 0 -0.087 0.122 34 12

Total number of rows: 10000

Table truncated, full table size 1835 Kbytes.




Supplementary file Size Download File type/resource
GSM35228,35229,35231-135 Alexa 647.tif.gz 16.1 Mb (ftp)(http) TIFF
GSM35228,35229,35231-135 Cyanine 3.tif.gz 97.0 Kb (ftp)(http) TIFF

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