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Status |
Public on Dec 02, 2005 |
Title |
135a: Spleen-heart |
Sample type |
RNA |
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Channel 1 |
Source name |
Spleen
|
Organism |
Rattus norvegicus |
Extracted molecule |
total RNA |
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|
Channel 2 |
Source name |
Heart
|
Organism |
Rattus norvegicus |
Extracted molecule |
total RNA |
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Description |
Normal organ tissue cDNA hybridizations.
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Submission date |
Nov 12, 2004 |
Last update date |
May 29, 2005 |
Contact name |
Zhongming Chen |
E-mail(s) |
[email protected]
|
Phone |
405-744-0329
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URL |
http://www.cvm.okstate.edu/research/Facilities/LungBiologyLab/
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Organization name |
Oklahoma State University
|
Department |
Deptment of Physiological Sciences
|
Lab |
Lin Liu Lab
|
Street address |
264 McElroy Hall
|
City |
Stillwater |
State/province |
OK |
ZIP/Postal code |
74078 |
Country |
USA |
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Platform ID |
GPL1699 |
Series (1) |
GSE1963 |
Parallel Hybridizations of six organs |
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Data table header descriptions |
ID_REF |
|
VALUE |
Log2 ratio of CH1_MEAN vs. CH2_MEAN |
CH1_MEAN |
Green (Cy3): Linearly scaled F3 mean: percentile 5 to 0, percentile 95 to 255 |
CH2_MEAN |
Red (Alexa 647): Linearly scaled F5 mean: percentile 5 to 0, percentile 95 to 255 |
F3 Mean - B3 |
F3=Cy3 or green channel |
F5 Mean - B5 |
F5=Alexa 647 or red channel |
F3 Mean |
|
F3 Median |
|
F3 Median - B3 |
|
F3 SD |
|
F3 Total Intensity |
|
F5 % Sat. |
|
F Pixels |
|
F3 % Sat. |
|
F5 Mean |
|
F5 Median |
|
F5 Median - B5 |
|
F5 SD |
|
F5 Total Intensity |
|
B Pixels |
|
B3 Mean |
|
B3 Median |
|
B3 SD |
|
B5 Mean |
|
B5 Median |
|
B5 SD |
|
Flags |
Spot quality from GenPix |
Index |
|
Log Ratio (5/3) |
|
Mean of Ratios (5/3) |
|
Median of Ratios (5/3) |
|
Ratio of Means (5/3) |
|
Ratio of Medians (5/3) |
|
Ratios SD (5/3) |
|
Rgn Ratio (5/3) |
|
Rgn R? (5/3) |
|
SNR 3 |
|
SNR 5 |
|
Sum of Means |
|
Sum of Medians |
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Data table |
ID_REF |
VALUE |
CH1_MEAN |
CH2_MEAN |
F3 Mean - B3 |
F5 Mean - B5 |
F3 Mean |
F3 Median |
F3 Median - B3 |
F3 SD |
F3 Total Intensity |
F5 % Sat. |
F Pixels |
F3 % Sat. |
F5 Mean |
F5 Median |
F5 Median - B5 |
F5 SD |
F5 Total Intensity |
B Pixels |
B3 Mean |
B3 Median |
B3 SD |
B5 Mean |
B5 Median |
B5 SD |
Flags |
Index |
Log Ratio (5/3) |
Mean of Ratios (5/3) |
Median of Ratios (5/3) |
Ratio of Means (5/3) |
Ratio of Medians (5/3) |
Ratios SD (5/3) |
Rgn Ratio (5/3) |
Rgn R? (5/3) |
SNR 3 |
SNR 5 |
Sum of Means |
Sum of Medians |
AF007818 |
2.317549654 |
1.32 |
6.58 |
28 |
13 |
130 |
109 |
7 |
54 |
20240 |
0 |
156 |
0 |
127 |
116 |
2 |
44 |
19861 |
692 |
123 |
102 |
53 |
123 |
114 |
41 |
-50 |
1 |
-1.807 |
1.036 |
1.25 |
0.464 |
0.286 |
4.408 |
4.903 |
0.007 |
0.132 |
0.098 |
41 |
9 |
AF027331 |
0.986904342 |
1.66 |
3.29 |
26 |
7 |
131 |
114 |
9 |
55 |
20473 |
0 |
156 |
0 |
118 |
106 |
-5 |
36 |
18367 |
512 |
158 |
105 |
701 |
144 |
111 |
396 |
-50 |
2 |
0 |
1.034 |
1.044 |
0.269 |
-0.556 |
3.896 |
0.559 |
0.982 |
-0.039 |
-0.066 |
33 |
4 |
AF032925 |
0.235190773 |
4.97 |
5.85 |
37 |
19 |
141 |
111 |
7 |
75 |
22003 |
0 |
156 |
0 |
125 |
115 |
9 |
41 |
19449 |
523 |
156 |
104 |
694 |
137 |
106 |
392 |
-50 |
3 |
0.363 |
0.808 |
0.696 |
0.514 |
1.286 |
4.437 |
0.698 |
0.469 |
-0.022 |
-0.031 |
56 |
16 |
AF046886 |
2.37064338 |
0.99 |
5.12 |
23 |
20 |
129 |
105 |
-1 |
57 |
20057 |
0 |
156 |
0 |
123 |
107 |
4 |
43 |
19170 |
562 |
127 |
106 |
56 |
114 |
103 |
38 |
-50 |
4 |
0 |
0.633 |
0.629 |
0.87 |
-4 |
4.299 |
0.167 |
0.015 |
0.036 |
0.237 |
43 |
3 |
S79292 |
-0.296916207 |
6.29 |
5.12 |
39 |
18 |
145 |
126 |
20 |
71 |
22566 |
0 |
156 |
0 |
123 |
109 |
4 |
54 |
19246 |
553 |
212 |
106 |
1722 |
161 |
105 |
724 |
-50 |
5 |
-2.322 |
0.689 |
0.625 |
0.462 |
0.2 |
4.225 |
0.413 |
0.947 |
-0.039 |
-0.052 |
57 |
24 |
NM_053986 |
-0.008743633 |
3.31 |
3.29 |
30 |
8 |
136 |
109 |
3 |
66 |
21180 |
0 |
156 |
0 |
118 |
108 |
-2 |
36 |
18333 |
496 |
218 |
106 |
1818 |
169 |
110 |
764 |
-50 |
6 |
0 |
0.733 |
0.801 |
0.267 |
-0.667 |
3.817 |
0.412 |
0.949 |
-0.045 |
-0.067 |
38 |
1 |
NM_019360 |
2.63180798 |
37.42 |
231.93 |
135 |
641 |
239 |
207 |
103 |
112 |
37315 |
0 |
156 |
0 |
743 |
723 |
621 |
275 |
115910 |
486 |
122 |
104 |
53 |
116 |
102 |
42 |
0 |
7 |
2.592 |
5.855 |
4.78 |
4.748 |
6.029 |
2.887 |
6.1 |
0.278 |
2.208 |
14.929 |
776 |
724 |
M35602 |
-0.703468682 |
5.96 |
3.66 |
40 |
19 |
144 |
111 |
7 |
93 |
22390 |
0 |
156 |
0 |
119 |
105 |
5 |
40 |
18490 |
573 |
125 |
104 |
56 |
113 |
100 |
40 |
-50 |
8 |
-0.485 |
0.741 |
0.733 |
0.475 |
0.714 |
4.314 |
0.141 |
0.027 |
0.339 |
0.15 |
59 |
12 |
M64391 |
0.657718843 |
4.64 |
7.32 |
37 |
28 |
140 |
120 |
17 |
69 |
21848 |
0 |
156 |
0 |
129 |
118 |
17 |
55 |
20179 |
512 |
126 |
103 |
59 |
111 |
101 |
35 |
-50 |
9 |
0 |
0.889 |
0.947 |
0.757 |
1 |
3.843 |
0.313 |
0.053 |
0.237 |
0.514 |
65 |
34 |
S48142 |
0.137503524 |
1 |
1.1 |
20 |
11 |
122 |
100 |
-2 |
53 |
19051 |
0 |
156 |
0 |
112 |
103 |
2 |
34 |
17457 |
512 |
125 |
102 |
58 |
112 |
101 |
35 |
-50 |
10 |
0 |
0.766 |
0.778 |
0.55 |
-1 |
4.015 |
0.171 |
0.069 |
-0.052 |
0 |
31 |
0 |
AB050745 |
0.819717423 |
1.66 |
2.93 |
27 |
13 |
131 |
112 |
8 |
64 |
20443 |
0 |
156 |
0 |
117 |
105 |
1 |
40 |
18223 |
522 |
125 |
104 |
55 |
114 |
104 |
40 |
-50 |
11 |
-3 |
0.834 |
0.912 |
0.481 |
0.125 |
2.856 |
14.588 |
0.003 |
0.109 |
0.075 |
40 |
9 |
NM_030838 |
5.588361077 |
5.3 |
255 |
37 |
732 |
142 |
131 |
26 |
58 |
17061 |
0 |
120 |
0 |
833 |
847 |
746 |
358 |
99932 |
399 |
125 |
105 |
51 |
112 |
101 |
41 |
0 |
12 |
4.843 |
11.724 |
13.426 |
19.784 |
28.692 |
2.413 |
49.317 |
0.021 |
0.333 |
17.585 |
769 |
772 |
NM_017026 |
0.728948577 |
3.97 |
6.58 |
39 |
25 |
138 |
120 |
21 |
64 |
21556 |
0 |
156 |
0 |
127 |
111 |
9 |
54 |
19888 |
577 |
119 |
99 |
48 |
112 |
102 |
36 |
-50 |
13 |
-1.222 |
0.608 |
0.682 |
0.641 |
0.429 |
5.322 |
0.081 |
0.003 |
0.396 |
0.417 |
64 |
30 |
NM_053295 |
-0.733007581 |
3.64 |
2.19 |
34 |
10 |
137 |
122 |
19 |
67 |
21406 |
0 |
156 |
0 |
115 |
108 |
3 |
41 |
17979 |
512 |
126 |
103 |
63 |
118 |
105 |
47 |
-50 |
14 |
-2.663 |
0.839 |
0.929 |
0.294 |
0.158 |
4.279 |
0.342 |
0.092 |
0.175 |
-0.064 |
44 |
22 |
NM_023101 |
0.819717423 |
1.66 |
2.93 |
26 |
14 |
131 |
116 |
11 |
57 |
20420 |
0 |
156 |
0 |
117 |
104 |
1 |
38 |
18277 |
517 |
128 |
105 |
66 |
116 |
103 |
47 |
-50 |
15 |
-3.459 |
0.876 |
1.058 |
0.538 |
0.091 |
3.401 |
0.354 |
0.083 |
0.045 |
0.021 |
40 |
12 |
U60562 |
1.515174171 |
9.6 |
27.44 |
55 |
81 |
155 |
140 |
40 |
79 |
18632 |
0 |
120 |
0 |
184 |
164 |
61 |
77 |
22105 |
373 |
121 |
100 |
53 |
113 |
103 |
46 |
0 |
16 |
0.609 |
0.992 |
1.158 |
1.473 |
1.525 |
4.807 |
1.025 |
0.019 |
0.642 |
1.543 |
136 |
101 |
NM_012873 |
-1.418555411 |
41.06 |
15.36 |
147 |
46 |
250 |
244 |
141 |
115 |
30044 |
0 |
120 |
0 |
151 |
140 |
35 |
66 |
18101 |
531 |
125 |
103 |
59 |
115 |
105 |
45 |
0 |
17 |
-2.01 |
0.422 |
0.469 |
0.313 |
0.248 |
3.84 |
0.214 |
0.069 |
2.119 |
0.8 |
193 |
176 |
M25823 |
-3.161234041 |
3.31 |
0.37 |
34 |
10 |
136 |
116 |
14 |
65 |
21191 |
0 |
156 |
0 |
110 |
102 |
2 |
33 |
17231 |
703 |
123 |
102 |
76 |
112 |
100 |
42 |
-50 |
18 |
-2.807 |
0.679 |
0.684 |
0.294 |
0.143 |
2.854 |
0.065 |
0.007 |
0.171 |
-0.048 |
44 |
16 |
NM_019323 |
0.598881002 |
8.94 |
13.54 |
47 |
45 |
153 |
139 |
33 |
68 |
7949 |
0 |
52 |
0 |
146 |
127 |
26 |
57 |
7615 |
272 |
124 |
106 |
50 |
114 |
101 |
49 |
0 |
19 |
-0.344 |
1.04 |
0.978 |
0.957 |
0.788 |
3.786 |
0.237 |
0.001 |
0.58 |
0.653 |
92 |
59 |
NM_053655 |
2.13422094 |
1 |
4.39 |
18 |
16 |
124 |
112 |
6 |
50 |
19276 |
0 |
156 |
0 |
121 |
111 |
6 |
44 |
18841 |
607 |
130 |
106 |
69 |
116 |
105 |
41 |
-50 |
20 |
0 |
0.852 |
0.8 |
0.889 |
1 |
3.521 |
30.217 |
0 |
-0.087 |
0.122 |
34 |
12 |
Total number of rows: 10000
Table truncated, full table size 1835 Kbytes.
Supplementary file |
Size |
Download |
File type/resource |
GSM35228,35229,35231-135 Alexa 647.tif.gz |
16.1 Mb |
(ftp)(http) |
TIFF |
GSM35228,35229,35231-135 Cyanine 3.tif.gz |
97.0 Kb |
(ftp)(http) |
TIFF |
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