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| Status |
Public on Sep 25, 2020 |
| Title |
WT2minus |
| Sample type |
SRA |
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| Source name |
WT minus
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| Organism |
Brachypodium distachyon |
| Characteristics |
genotype: WT
treatment: mock
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNA extraction using Sigma Spectrum Plant total RNA kit; library prep with Illumina TruSeq kit
RNA libraries were prepared for sequencing using standard Illumina protocols
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2000 |
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| Data processing |
FastQC
Tophat2
Cufflinks
Supplementary_files_format_and_content: FPKM
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| Submission date |
Dec 29, 2018 |
| Last update date |
Sep 25, 2020 |
| Contact name |
Stephan Wenkel |
| E-mail(s) |
[email protected]
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| Organization name |
University of Copenhagen
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| Street address |
Thorvaldsensvej 40
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| City |
Frederiksberg C |
| ZIP/Postal code |
1871 |
| Country |
Denmark |
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| Platform ID |
GPL17337 |
| Series (1) |
| GSE124493 |
Brachypodium distachyon identification of MeJA responsive genes in wild type and MTL-overexpression plants |
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| Relations |
| BioSample |
SAMN10662445 |
| SRA |
SRX5190048 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM3535269_ABI6minus.txt.gz |
700.7 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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