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Sample GSM35962 Query DataSets for GSM35962
Status Public on Nov 24, 2004
Title PROSTATE_PC3
Sample type RNA
 
Channel 1
Source name Cy5-PROSTATE_PC3
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name Cy3-pool of 12 lines
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description see Nature Genetics, volume 24 no. 3 pp 227 - 244.
 
Submission date Nov 22, 2004
Last update date Mar 13, 2006
Contact name Jennifer Fostel
E-mail(s) [email protected]
Phone 919 541 5055
Organization name NIEHS
Department
Street address
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platform ID GPL1290
Series (1)
GSE2003 NCI cDNA microarray-human 60 cell lines

Data table header descriptions
ID_REF
CH1_BKD_RAW Channel 1 background intensity
CH1RAW-CH1BKD Difference of CH1 total intensity - CH1 background intensity
CH2_BKD_RAW Channel 2 background intensity
CH2RAW-CH2BKD Difference of CH2 total intensity - CH2 background intensity
FLAG Flagged for visual artifacts in the hybridization spots
CH1_FIT CH1 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
CH2_FIT CH2 intensity after "Fitted Line" normalization; Cancer Res, 62: 1688-1695, 2002
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Ratio of CH2/CH1
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF CH1_BKD_RAW CH1RAW-CH1BKD CH2_BKD_RAW CH2RAW-CH2BKD FLAG CH1_FIT CH2_FIT VALUE PRE_VALUE UNF_VALUE
1 1984 1008 840 764 0 2164.1 2217.6 0.0352319966025282 1.024721593 0.0352319966025282
2 1824 2034 1048 1785 0 2914.7 3749.9 0.363504724224471 1.286547501 0.363504724224471
3 1984 27444 840 16455 0 23848.7 21341.1 -0.160276085919038 0.894853808 -0.160276085919038
4 1848 807 1056 401 0 1889.9 2046.9 0.11513072214391 1.083073178 0.11513072214391
5 1968 263 856 128 0 1520.6 1443.7 -0.0748697146311225 0.949427857 -0.0748697146311225
6 1840 8582 1016 6644 0 8445.3 9452.9 0.162608321165156 1.119308965 0.162608321165156
7 1920 598 800 351 0 1753.2 1653.1 -0.0848165851842416 0.942904403 -0.0848165851842416
8 1960 4040 856 2550 0 4651.2 4393.7 -0.0821666099191517 0.944637943 -0.0821666099191517
9 1920 33693 808 34392 0 31463.7 39842 0.340601734242608 1.266284639 0.340601734242608
10 1928 530 856 239 0 1701.9 1581.5 -0.105852713875843 0.929255538 -0.105852713875843
11 1968 431 808 305 0 1660 1608.5 -0.0454673050075201 0.968975904 -0.0454673050075201
12 1920 437 824 146 0 1611.1 1419.1 -0.183069788901237 0.880826764 -0.183069788901237
13 1872 4030 808 1896 0 4541.2 3514.3 -0.369836222548705 0.773870343 -0.369836222548705
14 1864 552 1008 291 0 1692.5 1854.3 0.131718836453138 1.095598227 0.131718836453138
15 1872 3598 824 2855 0 4238.7 4747.7 0.163606914897281 1.120083988 0.163606914897281
16 1888 2235 1048 899 0 3072.7 2612.5 -0.234075880362566 0.85022944 -0.234075880362566
17 1864 4338 800 2950 0 4825.8 4819.4 -0.00191457921977213 0.998673795 -0.00191457921977213
18 1896 307 1072 147 0 1525.1 1760.9 0.20740913921142 1.154612812 0.20740913921142
19 1904 227 744 171 0 1440.1 1353.9 -0.0890478103801338 0.940143046 -0.0890478103801338
20 1856 18683 792 444 0 16020.8 1584.6 -3.33775558411556 0.098908918 -3.33775558411556

Total number of rows: 9706

Table truncated, full table size 838 Kbytes.




Supplementary data files not provided
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