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Sample GSM368199 Query DataSets for GSM368199
Status Public on Feb 12, 2009
Title AHYPYLM19
Sample type RNA
 
Source name Adenohypophysis,Youli,male
Organism Sus scrofa
Characteristics tissue: Adenohypophysis
breed: Youli
sex: male
Treatment protocol At necropsy, samples of 16 tissues were collected, snap frozen in liquid nitrogen and stored at -80 ºC, until de RNA extraction.
Growth protocol Pigs with one month of age were housed simultaneously, fed the same diets during the fattening period, that lasted two months.
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from 100 mg tissue using the RiboPure™ kit (Ambion, Austin, USA) according to the manufacturer’s protocol.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol The hybridization was done according to Affymetrix standard protocols.
Scan protocol Standard Affymetrix protocol
Description Adenohypophysis,Youli,male
Data processing Microarray expression data were generated with GeneChip Operating Software (GCOS)
 
Submission date Feb 06, 2009
Last update date Feb 12, 2009
Contact name Miguel Perez-Enciso
E-mail(s) [email protected]
Phone +34935814225
URL http://www.icrea.es
Organization name Universitat Autonoma Barcelona
Department Animal Science
Lab Animal Breeding
Street address Veterinary School
City Bellaterra
ZIP/Postal code 08193
Country Spain
 
Platform ID GPL3533
Series (1)
GSE14739 Impact of breed and sex on porcine endocrine transcriptome: A Bayesian biometrical analysis

Data table header descriptions
ID_REF
VALUE All CEL files were normalized simultaneously with the GCRMA procedure

Data table
ID_REF VALUE
AFFX-BioB-3_at 8.452765425
AFFX-BioB-5_at 7.929646585
AFFX-BioB-M_at 9.051341514
AFFX-BioC-3_at 10.46377786
AFFX-BioC-5_at 9.51112784
AFFX-BioDn-3_at 11.79406137
AFFX-BioDn-5_at 11.55652435
AFFX-CreX-3_at 14.10672628
AFFX-CreX-5_at 14.0658601
AFFX-DapX-3_at 8.601217518
AFFX-DapX-5_at 7.476941982
AFFX-DapX-M_at 8.306592549
AFFX-LysX-3_at 4.705416805
AFFX-LysX-5_at 3.05051471
AFFX-LysX-M_at 2.665151936
AFFX-PheX-3_at 3.745523266
AFFX-PheX-5_at 3.574508643
AFFX-PheX-M_at 4.483026113
AFFX-r2-Bs-dap-3_at 9.571704085
AFFX-r2-Bs-dap-5_at 7.634541136

Total number of rows: 24123

Table truncated, full table size 698 Kbytes.




Supplementary file Size Download File type/resource
GSM368199.CEL.gz 1.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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