NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM368226 Query DataSets for GSM368226
Status Public on Feb 12, 2009
Title GONALWF06
Sample type RNA
 
Source name Gonad,LargeWhite,female
Organism Sus scrofa
Characteristics tissue: Gonad
breed: LargeWhite
sex: female
Treatment protocol At necropsy, samples of 16 tissues were collected, snap frozen in liquid nitrogen and stored at -80 ºC, until de RNA extraction.
Growth protocol Pigs with one month of age were housed simultaneously, fed the same diets during the fattening period, that lasted two months.
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from 100 mg tissue using the RiboPure™ kit (Ambion, Austin, USA) according to the manufacturer’s protocol.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol The hybridization was done according to Affymetrix standard protocols.
Scan protocol Standard Affymetrix protocol
Description Gonad,LargeWhite,female
Data processing Microarray expression data were generated with GeneChip Operating Software (GCOS)
 
Submission date Feb 06, 2009
Last update date Feb 12, 2009
Contact name Miguel Perez-Enciso
E-mail(s) [email protected]
Phone +34935814225
URL http://www.icrea.es
Organization name Universitat Autonoma Barcelona
Department Animal Science
Lab Animal Breeding
Street address Veterinary School
City Bellaterra
ZIP/Postal code 08193
Country Spain
 
Platform ID GPL3533
Series (1)
GSE14739 Impact of breed and sex on porcine endocrine transcriptome: A Bayesian biometrical analysis

Data table header descriptions
ID_REF
VALUE All CEL files were normalized simultaneously with the GCRMA procedure

Data table
ID_REF VALUE
AFFX-BioB-3_at 7.797328326
AFFX-BioB-5_at 7.663523622
AFFX-BioB-M_at 8.476143375
AFFX-BioC-3_at 9.93759422
AFFX-BioC-5_at 8.881182361
AFFX-BioDn-3_at 11.48784483
AFFX-BioDn-5_at 11.40962988
AFFX-CreX-3_at 14.02002615
AFFX-CreX-5_at 13.99770432
AFFX-DapX-3_at 8.284640575
AFFX-DapX-5_at 6.927603189
AFFX-DapX-M_at 8.035265378
AFFX-LysX-3_at 4.757651442
AFFX-LysX-5_at 2.941446567
AFFX-LysX-M_at 2.632124449
AFFX-PheX-3_at 3.169336279
AFFX-PheX-5_at 3.188990043
AFFX-PheX-M_at 4.091585225
AFFX-r2-Bs-dap-3_at 9.294539377
AFFX-r2-Bs-dap-5_at 7.142470543

Total number of rows: 24123

Table truncated, full table size 698 Kbytes.




Supplementary file Size Download File type/resource
GSM368226.CEL.gz 1.9 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap