NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM368246 Query DataSets for GSM368246
Status Public on Feb 12, 2009
Title HYPTYLM18
Sample type RNA
 
Source name Hypothalamus,Youli,male
Organism Sus scrofa
Characteristics tissue: Hypothalamus
breed: Youli
sex: male
Treatment protocol At necropsy, samples of 16 tissues were collected, snap frozen in liquid nitrogen and stored at -80 ºC, until de RNA extraction.
Growth protocol Pigs with one month of age were housed simultaneously, fed the same diets during the fattening period, that lasted two months.
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from 100 mg tissue using the RiboPure™ kit (Ambion, Austin, USA) according to the manufacturer’s protocol.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol The hybridization was done according to Affymetrix standard protocols.
Scan protocol Standard Affymetrix protocol
Description Hypothalamus,Youli,male
Data processing Microarray expression data were generated with GeneChip Operating Software (GCOS)
 
Submission date Feb 06, 2009
Last update date Feb 12, 2009
Contact name Miguel Perez-Enciso
E-mail(s) [email protected]
Phone +34935814225
URL http://www.icrea.es
Organization name Universitat Autonoma Barcelona
Department Animal Science
Lab Animal Breeding
Street address Veterinary School
City Bellaterra
ZIP/Postal code 08193
Country Spain
 
Platform ID GPL3533
Series (1)
GSE14739 Impact of breed and sex on porcine endocrine transcriptome: A Bayesian biometrical analysis

Data table header descriptions
ID_REF
VALUE All CEL files were normalized simultaneously with the GCRMA procedure

Data table
ID_REF VALUE
AFFX-BioB-3_at 7.760920679
AFFX-BioB-5_at 7.812282034
AFFX-BioB-M_at 8.384616428
AFFX-BioC-3_at 9.807484706
AFFX-BioC-5_at 8.922501687
AFFX-BioDn-3_at 11.37871524
AFFX-BioDn-5_at 11.31884702
AFFX-CreX-3_at 14.0111412
AFFX-CreX-5_at 14.03325348
AFFX-DapX-3_at 7.431800305
AFFX-DapX-5_at 6.143331621
AFFX-DapX-M_at 7.096470276
AFFX-LysX-3_at 4.376260917
AFFX-LysX-5_at 2.856142173
AFFX-LysX-M_at 2.684742856
AFFX-PheX-3_at 3.462004889
AFFX-PheX-5_at 3.135130367
AFFX-PheX-M_at 3.659564173
AFFX-r2-Bs-dap-3_at 8.085365377
AFFX-r2-Bs-dap-5_at 6.114299004

Total number of rows: 24123

Table truncated, full table size 698 Kbytes.




Supplementary file Size Download File type/resource
GSM368246.CEL.gz 1.9 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap