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| Status |
Public on Dec 05, 2020 |
| Title |
hCSCFD2 |
| Sample type |
SRA |
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| Source name |
cardiac stem cells
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| Organism |
Homo sapiens |
| Characteristics |
cell type: primary adult stem cells
culture method: cultured in DMEM-F12 + 10% FCS + 5ng/ml FGF2 + 10ng/ml EGF
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| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was harvested using Macherey Nagel RNA isolation Kit
RNA libraries were prepared for sequencing using standard Illumina protocols
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2000 |
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| Data processing |
Mapping: Tophat, Version V2.0.9, Parameter: mismatch = 2
Quantification: HTseq, Version v0.6.1, Parameter: -m union
Supplementary_files_format_and_content: tab-delimited text files include FPKM values for each Sample ...
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| Submission date |
Apr 09, 2019 |
| Last update date |
Dec 05, 2020 |
| Contact name |
Christian Kaltschmidt |
| Organization name |
University of Bielefeld
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| Department |
Department of Cell Biology
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| Street address |
Universitätstraße 25
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| City |
Bielefeld |
| ZIP/Postal code |
33615 |
| Country |
Germany |
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| Platform ID |
GPL11154 |
| Series (1) |
| GSE129547 |
Transcriptome Analysis Reveals High Similarities between Adult Human Cardiac Stem Cells and Neural Crest-Derived Stem Cells |
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| Relations |
| BioSample |
SAMN11375096 |
| SRA |
SRX5659210 |
| Supplementary data files not provided |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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