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Sample GSM375930 Query DataSets for GSM375930
Status Public on Nov 23, 2009
Title mSMC-Control-2h-0
Sample type RNA
 
Source name Aortic Smooth Muscle Cells
Organism Mus musculus
Characteristics strain: C57BL/6J, Gender: male, Age: 10-12 weeks, Tissue: aorta
Treatment protocol Cells were feed 24h prior to stimulation, stimuli were added in PBS, Cells were supplemented with PBS only
Growth protocol Maintained in DMEM/F12, 10% FCS, feed every 48h
Extracted molecule total RNA
Extraction protocol Qiagen RNEasy Lipid Tissue Mini Kit, Standard protocol
Label Biotin/SAPE with Anti Streptavidin signal amplification
Label protocol ENZO T7 High Yield Transcript Labelling Kit, 16h IVT
 
Hybridization protocol 60rpm, 18h, 45°C in Affymetrix Hybridization Buffer
Scan protocol Affymetrix Scanner 3000, single scan
Description Staining with Fluidic Station 450 Protocol: EukGe-WS2v4
Data processing GCOS 1.4, scaled to 500
 
Submission date Mar 02, 2009
Last update date Nov 23, 2009
Contact name Andreas Johann Richard Habenicht
E-mail(s) [email protected]
Organization name Ludwig Maximilians Universität München
Department Medicine
Lab Institute for Cardiovascular Disease Prevention
Street address Pettenkoferstraße 9a
City Munich
State/province Bavaria
ZIP/Postal code 80336
Country Germany
 
Platform ID GPL1261
Series (1)
GSE15062 Mouse aorta smooth muscle cells differentiate into lymphoid tissue organizers upon combined TNFR1/LTBR NF-kB signaling

Data table header descriptions
ID_REF
VALUE Signal value scaled to 500 by GCOS
ABS_CALL Call by default alpha
DETECTION P-VALUE Detection p-value as calculated by GCOS

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 286.7 P 0.001102
AFFX-BioB-M_at 424 P 0.00034
AFFX-BioB-3_at 245.1 P 0.00034
AFFX-BioC-5_at 894.5 P 0.000258
AFFX-BioC-3_at 1258.2 P 0.000044
AFFX-BioDn-5_at 1942 P 0.000195
AFFX-BioDn-3_at 4118.6 P 0.000169
AFFX-CreX-5_at 10756.9 P 0.000052
AFFX-CreX-3_at 12209.2 P 0.000044
AFFX-DapX-5_at 2552.7 P 0.000044
AFFX-DapX-M_at 3776.2 P 0.000081
AFFX-DapX-3_at 3898.9 P 0.000044
AFFX-LysX-5_at 275.5 P 0.000052
AFFX-LysX-M_at 460.5 P 0.000258
AFFX-LysX-3_at 827.2 P 0.000044
AFFX-PheX-5_at 491.5 P 0.00007
AFFX-PheX-M_at 500.9 P 0.00011
AFFX-PheX-3_at 515 P 0.00007
AFFX-ThrX-5_at 583.4 P 0.00011
AFFX-ThrX-M_at 697.4 P 0.000044

Total number of rows: 45101

Table truncated, full table size 1215 Kbytes.




Supplementary file Size Download File type/resource
GSM375930.CEL.gz 3.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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