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GEO accession:
Sample GSM38107
Query DataSets for GSM38107
Status
Public on Jan 15, 2005
Title
Colon - 8266
Sample type
RNA
Source name
Colon
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Quality metric = 28S to 18S: 1.4
Patient Age: 70-80
Gender: Female
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 46-50
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: No
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 17
Screening studies performed?: Yes
Diagnosis made by: Colonoscopy
Pathological T: 3
Pathological N: 1
Pathological M: 0
Pathological Stage: 3B
Pathological Grade: 2
Pathological Dukes Stage: C
Primary Site: Colon
Histology: Adenocarcinoma
Submission date
Dec 23, 2004
Last update date
Aug 28, 2018
Contact name
Erin Curley
E-mail(s)
[email protected]
Phone
602-343-8808
Fax
602-343-8440
URL
http://www.intgen.org
Organization name
IGC
Department
Lab
expO
Street address
445 N. 5th Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85004
Country
USA
Platform ID
GPL570
Series (1)
GSE2109
Expression Project for Oncology (expO)
Relations
Reanalyzed by
GSE64985
Reanalyzed by
GSE119087
Data table header descriptions
ID_REF
The name of the probe set, blank for control probes
VALUE
The signal value calculated by MAS5, normalized
ABS_CALL
The detection value calculated by the MAS5
DETECTION P-VALUE
The detection p-value calculated by the MAS5
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
1003.8
P
0.000662
AFFX-BioB-M_at
1399.5
P
0.000044
AFFX-BioB-3_at
693.3
P
0.000095
AFFX-BioC-5_at
2345.8
P
0.000052
AFFX-BioC-3_at
2906.2
P
0.000044
AFFX-BioDn-5_at
6136.1
P
0.000044
AFFX-BioDn-3_at
11005.4
P
0.000052
AFFX-CreX-5_at
27835
P
0.000052
AFFX-CreX-3_at
34970.2
P
0.000044
AFFX-DapX-5_at
972.7
P
0.000052
AFFX-DapX-M_at
1869.4
P
0.000581
AFFX-DapX-3_at
2390.5
P
0.000044
AFFX-LysX-5_at
186.4
P
0.000258
AFFX-LysX-M_at
284.1
P
0.021902
AFFX-LysX-3_at
461.3
P
0.000127
AFFX-PheX-5_at
160.9
P
0.000258
AFFX-PheX-M_at
165.7
P
0.001102
AFFX-PheX-3_at
354.5
P
0.000972
AFFX-ThrX-5_at
308.6
P
0.000147
AFFX-ThrX-M_at
403.7
P
0.000662
Total number of rows:
54675
Table truncated, full table size
1449 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM38107.CEL.gz
8.2 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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