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| Status |
Public on Mar 20, 2009 |
| Title |
mSAGE_Brain_normal_TS20_LCM_SM109 |
| Sample type |
SAGE |
| Anchor |
NlaIII
|
| Tag Count |
115932 |
| Tag Length |
10 |
| |
|
| Source name |
brain, normal, laser capture microdissected, extracted short sage, sagelite, thalamus, dorsal, ts20, mid-gestation embryo
|
| Organism |
Mus musculus |
| Characteristics |
organ/tissue: brain
tissue preparation: laser capture microdissected
age: E12.5/TS20
sex: unknown
|
| Biomaterial provider |
Elizabeth Simpson Lab
|
| Extracted molecule |
total RNA |
| Extraction protocol |
N/A
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| |
|
| Description |
Tagging_enzyme: Mme I
CGAP_Numeric_library_ID: 1703
Library_producer: David Charest Lab
Laboratory: Marco Marra, Genome Sciences Centre, Vancouver, BC
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| |
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| Submission date |
Mar 19, 2009 |
| Last update date |
Mar 20, 2009 |
| Contact name |
Cancer Genome Anatomy Project CGAP |
| E-mail(s) |
[email protected]
|
| Phone |
301-496-1550
|
| URL |
http://cgap.nci.nih.gov/
|
| Organization name |
National Cancer Institute
|
| Department |
Cancer Genome Anatomy Project
|
| Street address |
|
| City |
Bethesda |
| State/province |
MD |
| ZIP/Postal code |
20852 |
| Country |
USA |
| |
|
| Platform ID |
GPL11 |
| Series (2) |
| GSE14 |
Cancer Genome Anatomy Project (CGAP) SAGE Libraries |
| GSE15311 |
Cancer Genome Anatomy Project (CGAP) Mouse SAGE |
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| Data table header descriptions |
| TAG |
|
| COUNT |
|
| TPM |
tags per million |
| Data table |
| TAG |
COUNT |
TPM |
| AAAAAAAAAA |
239 |
2061.55 |
| AAAAAAAAAG |
2 |
17.25 |
| AAAAAAAAAT |
1 |
8.63 |
| AAAAAAAACT |
1 |
8.63 |
| AAAAAAAATA |
1 |
8.63 |
| AAAAAAAATT |
1 |
8.63 |
| AAAAAAACCA |
1 |
8.63 |
| AAAAAAACTA |
3 |
25.88 |
| AAAAAAACTG |
1 |
8.63 |
| AAAAAAAGAA |
3 |
25.88 |
| AAAAAAAGAC |
1 |
8.63 |
| AAAAAAAGTC |
1 |
8.63 |
| AAAAAAAGTG |
1 |
8.63 |
| AAAAAAATAA |
3 |
25.88 |
| AAAAAAATAT |
1 |
8.63 |
| AAAAAAATCT |
1 |
8.63 |
| AAAAAAATGA |
1 |
8.63 |
| AAAAAACAAA |
1 |
8.63 |
| AAAAAACCAA |
2 |
17.25 |
| AAAAAACCAC |
2 |
17.25 |
Total number of rows: 25612
Table truncated, full table size 461 Kbytes.
| Supplementary data files not provided |
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