|
| Status |
Public on Jun 04, 2019 |
| Title |
Hour12_wt_rep1 |
| Sample type |
SRA |
| |
|
| Source name |
embryo
|
| Organism |
Xenopus laevis |
| Characteristics |
developmental stage: Hour12
genotype/variation: wild type
|
| Treatment protocol |
morhpolino injections
|
| Growth protocol |
in vivo
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Qiagen RNAeasy mini kit
Poly-A selection
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2500 |
| |
|
| Data processing |
Sequences mapped using Kallisto
Differential gene expression of each sample was determined using Sleuth
Genome_build: JGI 7.1
Supplementary_files_format_and_content: tab deliminated text files containing all sleuth output fields
Supplementary_files_format_and_content: est_counts tpm
|
| |
|
| Submission date |
Jun 03, 2019 |
| Last update date |
Jun 05, 2019 |
| Contact name |
Martina Brueckner |
| Organization name |
Yale University
|
| Department |
Pediatrics
|
| Street address |
789 Howard Ave
|
| City |
New Haven |
| State/province |
CT |
| ZIP/Postal code |
06519 |
| Country |
USA |
| |
|
| Platform ID |
GPL18936 |
| Series (2) |
| GSE132116 |
Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility [RNA-Seq] |
| GSE132117 |
Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility |
|
| Relations |
| BioSample |
SAMN11940335 |
| SRA |
SRX5958820 |
