GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM38689
Query DataSets for GSM38689
Status
Public on Dec 20, 2005
Title
32m1
Sample type
RNA
Source name
Trizol extracted total RNA from uterine fibroid tissue.
Organism
Homo sapiens
Extracted molecule
total RNA
Description
Uterine fibroid tissue with mutated fumarate hydratase gene.
Submission date
Jan 10, 2005
Last update date
Dec 20, 2005
Contact name
Sakari Vanharanta
E-mail(s)
[email protected]
Organization name
University of Helsinki
Department
Translational Cancer Medicine Program
Lab
Vanharanta
Street address
Haartmaninkatu 8
City
Helsinki
ZIP/Postal code
00014
Country
Finland
Platform ID
GPL96
Series (2)
GSE2152
The effect of FH mutations on fibroid expression profile
GSE2724
The effect of FH mutations on fibroid expression profile, normal myometrium vs. FH-mutant fibroids.
Data table header descriptions
ID_REF
VALUE
MAS 5.0 Algorithm (mean scaled to 100)
ABS_CALL
MAS 5.0 Absent, Marginal, Present call (Alpha1 = 0.05, Alpha2 = 0.065)
DETECTION P-VALUE
MAS 5.0 Detection p-value
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
117.2
P
0.002556
AFFX-BioB-M_at
199.8
P
0.000258
AFFX-BioB-3_at
74.5
P
0.000509
AFFX-BioC-5_at
312.1
P
0.000147
AFFX-BioC-3_at
206.8
P
0.000095
AFFX-BioDn-5_at
251.7
P
0.000044
AFFX-BioDn-3_at
1797.7
P
0.00007
AFFX-CreX-5_at
2930.7
P
0.000044
AFFX-CreX-3_at
3985.8
P
0.000044
AFFX-DapX-5_at
5.1
A
0.425962
AFFX-DapX-M_at
8.9
A
0.287743
AFFX-DapX-3_at
1.9
A
0.852061
AFFX-LysX-5_at
0.4
A
0.945787
AFFX-LysX-M_at
5.4
A
0.672921
AFFX-LysX-3_at
7.4
A
0.262827
AFFX-PheX-5_at
11.2
A
0.41138
AFFX-PheX-M_at
11.2
A
0.354453
AFFX-PheX-3_at
11.5
A
0.382599
AFFX-ThrX-5_at
2.4
A
0.760937
AFFX-ThrX-M_at
7.7
A
0.617401
Total number of rows:
22283
Table truncated, full table size
579 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM38689.CEL.gz
3.3 Mb
(ftp)
(http)
CEL
GSM38689.EXP.gz
482 b
(ftp)
(http)
EXP
GSM38689.RPT.gz
943 b
(ftp)
(http)
RPT
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
