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Sample GSM388748 Query DataSets for GSM388748
Status Public on Jul 22, 2009
Title PPRF-ILC-day6_2
Sample type RNA
 
Source name re-differentiated cells, PPRF protocol, day 6
Organism Homo sapiens
Characteristics cell type: re-differentiated cells after expansion from islets
Treatment protocol INGAP 1.0 ug/mL
Growth protocol INGAP 1.0 ug/mL
Extracted molecule total RNA
Extraction protocol Qiagen
Label biotin
Label protocol Affymetrix
 
Hybridization protocol Following fragmentation, ten micrograms of adjusted cRNA from each sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
Scan protocol Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
Description Re-differentiated cells after expansion from islets with PPRF protocol day 6
Data processing Raw CEL intensity data were RMA normalized using R/Bioconductor
 
Submission date Apr 01, 2009
Last update date Jul 22, 2009
Contact name Burak Kutlu
E-mail(s) [email protected]
Phone 206-732-1200
Organization name Institute for Systems Biology
Street address 1441 North 34th Street
City Seattle
State/province WA
ZIP/Postal code 98103
Country USA
 
Platform ID GPL570
Series (1)
GSE15543 Meta analysis of gene expression in human islets after in vitro expansion.

Data table header descriptions
ID_REF
VALUE normalized log2 signal

Data table
ID_REF VALUE
1007_s_at 9.43976577769663
1053_at 7.04053360564665
117_at 6.12893196868216
121_at 7.75661311441151
1255_g_at 3.25930185735187
1294_at 6.95180084244326
1316_at 5.7727932569006
1320_at 5.76704298958226
1405_i_at 3.45544678730688
1431_at 4.04525432801034
1438_at 5.92710837533107
1487_at 7.87136139308367
1494_f_at 5.33294684749819
1552256_a_at 7.1372841741823
1552257_a_at 7.84463006610326
1552258_at 4.56009569637323
1552261_at 4.12589293634628
1552263_at 5.78945779840762
1552264_a_at 7.8071561159429
1552266_at 3.82294348761733

Total number of rows: 54675

Table truncated, full table size 1478 Kbytes.




Supplementary file Size Download File type/resource
GSM388748.CEL.gz 4.7 Mb (ftp)(http) CEL
Processed data included within Sample table

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