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GEO accession:
Sample GSM388749
Query DataSets for GSM388749
Status
Public on Jul 22, 2009
Title
islets_2
Sample type
RNA
Source name
islets
Organism
Homo sapiens
Characteristics
cell type: fresh islets
Treatment protocol
none
Growth protocol
none
Extracted molecule
total RNA
Extraction protocol
Qiagen
Label
biotin
Label protocol
Affymetrix
Hybridization protocol
Following fragmentation, ten micrograms of adjusted cRNA from each sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
Scan protocol
Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
Description
Fresh pancreatic islets
Data processing
Raw CEL intensity data were RMA normalized using R/Bioconductor
Submission date
Apr 01, 2009
Last update date
Jul 22, 2009
Contact name
Burak Kutlu
E-mail(s)
[email protected]
Phone
206-732-1200
Organization name
Institute for Systems Biology
Street address
1441 North 34th Street
City
Seattle
State/province
WA
ZIP/Postal code
98103
Country
USA
Platform ID
GPL570
Series (1)
GSE15543
Meta analysis of gene expression in human islets after in vitro expansion.
Data table header descriptions
ID_REF
VALUE
normalized log2 signal
Data table
ID_REF
VALUE
1007_s_at
11.1605681699260
1053_at
7.12829207281627
117_at
4.83625623338317
121_at
7.85741008734925
1255_g_at
3.24752236413536
1294_at
6.27914341314598
1316_at
5.07051987880582
1320_at
5.26210808638271
1405_i_at
3.81894225418449
1431_at
3.58071030061381
1438_at
5.24371872592879
1487_at
7.76928468302716
1494_f_at
5.1629849706194
1552256_a_at
7.4474668972352
1552257_a_at
7.08211342505122
1552258_at
4.7171266431746
1552261_at
3.93793300305183
1552263_at
5.68607624476331
1552264_a_at
8.43578620795071
1552266_at
3.96788591106022
Total number of rows:
54675
Table truncated, full table size
1479 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM388749.CEL.gz
5.2 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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