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GEO accession:
Sample GSM388753
Query DataSets for GSM388753
Status
Public on Jul 22, 2009
Title
islets_4
Sample type
RNA
Source name
islets
Organism
Homo sapiens
Characteristics
cell type: fresh islets
Treatment protocol
none
Growth protocol
none
Extracted molecule
total RNA
Extraction protocol
Qiagen
Label
biotin
Label protocol
Affymetrix
Hybridization protocol
Following fragmentation, ten micrograms of adjusted cRNA from each sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
Scan protocol
Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
Description
Fresh pancreatic islets
Data processing
Raw CEL intensity data were RMA normalized using R/Bioconductor
Submission date
Apr 01, 2009
Last update date
Jul 22, 2009
Contact name
Burak Kutlu
E-mail(s)
[email protected]
Phone
206-732-1200
Organization name
Institute for Systems Biology
Street address
1441 North 34th Street
City
Seattle
State/province
WA
ZIP/Postal code
98103
Country
USA
Platform ID
GPL570
Series (1)
GSE15543
Meta analysis of gene expression in human islets after in vitro expansion.
Data table header descriptions
ID_REF
VALUE
normalized log2 signal
Data table
ID_REF
VALUE
1007_s_at
11.7350069633365
1053_at
7.31342362729112
117_at
5.91201572305151
121_at
7.85830534424459
1255_g_at
3.07272452469
1294_at
7.20338818981786
1316_at
5.44537619859602
1320_at
5.05534940508754
1405_i_at
3.33000558890543
1431_at
3.53864251670508
1438_at
5.23824040873297
1487_at
7.78822581428027
1494_f_at
5.27038259212773
1552256_a_at
7.76965999997284
1552257_a_at
7.61367765685375
1552258_at
4.83920018973631
1552261_at
4.13682569645002
1552263_at
5.6853534910693
1552264_a_at
7.8655309825912
1552266_at
2.96854064306702
Total number of rows:
54675
Table truncated, full table size
1478 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM388753.CEL.gz
5.0 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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