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GEO accession:
Sample GSM388754
Query DataSets for GSM388754
Status
Public on Jul 22, 2009
Title
islets_5
Sample type
RNA
Source name
islets
Organism
Homo sapiens
Characteristics
cell type: fresh islets
Treatment protocol
none
Growth protocol
none
Extracted molecule
total RNA
Extraction protocol
Qiagen
Label
biotin
Label protocol
Affymetrix
Hybridization protocol
Following fragmentation, ten micrograms of adjusted cRNA from each sample was hybridized for 16 hours at 45 deg C to Affymetrix GeneChip
Scan protocol
Scanning was performed using the Affymetrix GeneChip 3000 Scanner. Images were processed into CEL files with the Affymetrix GCOS software.
Description
Fresh pancreatic islets
Data processing
Raw CEL intensity data were RMA normalized using R/Bioconductor
Submission date
Apr 01, 2009
Last update date
Jul 22, 2009
Contact name
Burak Kutlu
E-mail(s)
[email protected]
Phone
206-732-1200
Organization name
Institute for Systems Biology
Street address
1441 North 34th Street
City
Seattle
State/province
WA
ZIP/Postal code
98103
Country
USA
Platform ID
GPL570
Series (1)
GSE15543
Meta analysis of gene expression in human islets after in vitro expansion.
Data table header descriptions
ID_REF
VALUE
normalized log2 signal
Data table
ID_REF
VALUE
1007_s_at
10.6532767649369
1053_at
6.57429353530294
117_at
6.17091141185538
121_at
7.72815646513028
1255_g_at
3.14575299158262
1294_at
7.12511080886846
1316_at
5.074089541899
1320_at
4.94994691445496
1405_i_at
3.6694362478934
1431_at
3.83729382346245
1438_at
5.18420792782107
1487_at
7.86898219190138
1494_f_at
5.59549979651302
1552256_a_at
6.63885225691717
1552257_a_at
7.71545199699335
1552258_at
4.54867496898345
1552261_at
4.04162552718594
1552263_at
6.98596545952341
1552264_a_at
7.97944940748805
1552266_at
3.39790879494068
Total number of rows:
54675
Table truncated, full table size
1479 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM388754.CEL.gz
4.5 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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