|
| Status |
Public on Jun 02, 2009 |
| Title |
gra2-D |
| Sample type |
genomic |
| |
|
| Channel 1 |
| Source name |
gra2-D DNA tiling
|
| Organism |
Arabidopsis thaliana |
| Characteristics |
tissue: rosette
|
| Growth protocol |
plant were grown on MS medium under 16 h light/ 8 h dark cycle at 22°C
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
DNeasy plant mini kit (Qiagen) , according to manufacturer protocol
|
| Label |
biotin
|
| Label protocol |
Standard affymetrix protocol
|
| |
|
| Channel 2 |
| Source name |
WT
|
| Organism |
Arabidopsis thaliana |
| Characteristics |
tissue: rosette
|
| Growth protocol |
plant were grown on MS medium under 16 h light/ 8 h dark cycle at 22°C
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
DNeasy plant mini kit (Qiagen) , according to manufacturer protocol
|
| Label |
biotin
|
| Label protocol |
Standard affymetrix protocol
|
| |
|
| |
| Hybridization protocol |
Standard affymetrix protocol
|
| Scan protocol |
Standard affymetrix protocol
|
| Description |
grandifolia2-D DNA tiling array
|
| Data processing |
The algorithm MAT (Model based Analysis of Tiling-arrays (http://liulab.dfci.harvard.edu/MAT/) was used in order to detect duplicated or deleted genomic regions.
bar-file: binary file containing the MAT score for each probe. bed-file: text file containing the enriched genomics regions
|
| |
|
| Submission date |
Apr 17, 2009 |
| Last update date |
Sep 24, 2010 |
| Contact name |
Nathalie Gonzalez |
| E-mail(s) |
[email protected]
|
| Phone |
+32 (0)9 331 39 56
|
| Organization name |
VIB
|
| Department |
Plant System Biology
|
| Lab |
System Biology of Yield
|
| Street address |
Technologiepark 927
|
| City |
Gent |
| ZIP/Postal code |
9052 |
| Country |
Belgium |
| |
|
| Platform ID |
GPL10977 |
| Series (2) |
| GSE15725 |
Chromosomal duplication in the grandifolia-D mutants of Arabidopsis thaliana, tiling array data |
| GSE15726 |
Chromosomal duplication in the grandifolia-D mutants of Arabidopsis thaliana |
|
