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GEO accession:
Sample GSM402867
Query DataSets for GSM402867
Status
Public on Oct 31, 2011
Title
Hemo vs. whole 3
Sample type
RNA
Channel 1
Source name
hemocyte
Organism
Anopheles gambiae
Characteristics
strain: G3
cell type: hemocytes
Extracted molecule
total RNA
Extraction protocol
Qiagen
Label
Cy5
Label protocol
Agilent
Channel 2
Source name
mosquito
Organism
Anopheles gambiae
Characteristics
strain: G3
tissue: whole adult female mosquito
Extracted molecule
total RNA
Extraction protocol
Qiagen
Label
Cy3
Label protocol
Agilent
Hybridization protocol
Agilent
Scan protocol
GenePix
Description
Agilent
Data processing
In PMID 19500340
Submission date
May 13, 2009
Last update date
Oct 31, 2011
Contact name
George Dimopoulos
E-mail(s)
[email protected]
Phone
443 28 70128
Organization name
Johns Hopkins School of Public Health
Department
Molecular Microbiology and Immunology
Street address
615 N. Wolfe Street
City
Baltimore
State/province
MD
ZIP/Postal code
21205
Country
USA
Platform ID
GPL8552
Series (1)
GSE33269
Genome-wide transcriptomic profiling of Anopheles gambiae hemocytes reveals pathogen-specific signatures upon bacterial challenge and Plasmodium berghei infection
Data table header descriptions
ID_REF
F635 Median
F635 Mean
F635 SD
F635 CV
B635
B635 Median
B635 Mean
B635 SD
B635 CV
% > B635+1SD
% > B635+2SD
F635 % Sat.
F532 Median
F532 Mean
F532 SD
F532 CV
B532
B532 Median
B532 Mean
B532 SD
B532 CV
% > B532+1SD
% > B532+2SD
F532 % Sat.
Ratio of Medians (635/532)
Ratio of Means (635/532)
VALUE
value
Mean of Ratios (635/532)
Ratios SD (635/532)
Rgn Ratio (635/532)
Rgn R2 (635/532)
F Pixels
B Pixels
Circularity
Sum of Medians (635/532)
Sum of Means (635/532)
Log Ratio (635/532)
F635 Median - B635
F532 Median - B532
F635 Mean - B635
F532 Mean - B532
F635 Total Intensity
F532 Total Intensity
SNR 635
SNR 532
Flags
Data table
ID_REF
F635 Median
F635 Mean
F635 SD
F635 CV
B635
B635 Median
B635 Mean
B635 SD
B635 CV
% > B635+1SD
% > B635+2SD
F635 % Sat.
F532 Median
F532 Mean
F532 SD
F532 CV
B532
B532 Median
B532 Mean
B532 SD
B532 CV
% > B532+1SD
% > B532+2SD
F532 % Sat.
Ratio of Medians (635/532)
Ratio of Means (635/532)
VALUE
Mean of Ratios (635/532)
Ratios SD (635/532)
Rgn Ratio (635/532)
Rgn R2 (635/532)
F Pixels
B Pixels
Circularity
Sum of Medians (635/532)
Sum of Means (635/532)
Log Ratio (635/532)
F635 Median - B635
F532 Median - B532
F635 Mean - B635
F532 Mean - B532
F635 Total Intensity
F532 Total Intensity
SNR 635
SNR 532
Flags
1
61
64
27
42
37
37
37
10
27
71
55
0
23
25
5
20
21
21
21
2
9
46
25
0
12
6.75
6.429
6.782
2.887
11.718
0.257
52
400
100
26
31
3.585
24
2
27
4
3331
1277
2.7
2
-100
2
41
43
14
32
36
36
38
12
31
30
9
0
24
25
4
16
22
22
22
3
13
42
17
0
2.5
2.333
2.8
2.998
3.063
10.153
0.078
52
310
100
7
10
1.322
5
2
7
3
2229
1303
0.417
1
-100
3
185
200
95
47
35
35
37
11
29
95
95
0
297
296
91
30
22
22
22
3
13
100
99
0
0.545
0.602
0.553
0.545
1.608
0.64
0.771
120
608
100
425
439
-0.874
150
275
165
274
24049
35492
14.818
91.333
0
4
45
54
37
68
36
36
38
11
28
48
21
0
24
25
7
28
21
21
21
2
9
53
28
0
3
4.5
4
3.515
3.53
10.135
0.23
52
409
100
12
22
1.585
9
3
18
4
2786
1319
1.455
2
-100
5
36
38
11
28
36
36
38
11
28
18
4
0
24
24
3
12
22
22
22
4
18
22
3
0
0
1
2.6
2.167
4.084
-279.609
0
120
672
100
2
4
Error
0
2
2
2
4510
2917
0
0.5
-100
6
50
53
21
39
35
35
37
11
29
61
35
0
26
26
3
11
22
22
22
2
9
68
38
0
3.75
4.5
5.3
4.412
2.672
11.827
0.191
80
547
100
19
22
1.907
15
4
18
4
4254
2095
1.455
2
-100
7
40
40
13
32
36
36
37
11
29
20
5
0
23
23
3
13
22
22
22
2
9
23
5
0
4
4
4
3.452
2.539
37.011
0.015
120
625
100
5
5
2
4
1
4
1
4842
2745
0.273
0.5
-100
8
39
42
16
38
37
37
38
11
28
22
10
0
24
24
4
16
22
22
22
2
9
35
18
0
1
2.5
4
3.756
2.689
18.162
0.058
120
666
100
4
7
0
2
2
5
2
5027
2925
0.364
1
-100
9
39
44
22
50
37
37
38
11
28
25
13
0
24
24
3
12
21
21
21
2
9
57
23
0
0.667
2.333
3.667
3.306
3.094
24.927
0.044
120
636
100
5
10
-0.585
2
3
7
3
5227
2882
0.545
1.5
-100
10
41
45
16
35
35
35
37
10
27
34
17
0
26
26
4
15
22
22
22
2
9
71
36
0
1.5
2.5
2.333
2.323
3.193
9.935
0.103
52
329
100
10
14
0.585
6
4
10
4
2317
1368
0.8
2
-100
11
47
49
16
32
35
35
37
11
29
50
25
0
28
28
3
10
22
22
22
2
9
86
75
0
2
2.333
2.857
2.745
3.083
11.438
0.064
80
542
100
18
20
1
12
6
14
6
3895
2272
1.091
3
-100
12
46
52
22
42
36
36
37
10
27
46
28
0
25
28
11
39
22
22
22
2
9
53
40
0
3.333
2.667
3.25
2.261
3.153
3.275
0.621
32
230
100
13
22
1.737
10
3
16
6
1678
881
1.5
3
-100
13
39
42
17
40
35
35
36
10
27
29
14
0
23
23
3
13
22
22
22
3
13
15
5
0
4
7
4.5
4.15
2.79
20.614
0.051
120
715
100
5
8
2
4
1
7
1
5019
2794
0.6
0.333
-100
14
37
39
20
51
36
36
37
11
29
20
7
0
23
23
3
13
21
21
22
2
9
45
17
0
0.5
1.5
2.929
2.314
3.468
20.342
0.057
120
639
100
3
5
-1
1
2
3
2
4731
2811
0.182
0.5
-100
15
50
68
56
82
35
35
36
10
27
62
43
0
29
34
14
41
22
22
23
3
13
87
50
0
2.143
2.75
3.208
2.863
2.086
4.414
0.65
32
236
100
22
45
1.1
15
7
33
12
2180
1086
3.2
3.667
-100
16
43
56
73
130
34
34
36
11
30
35
18
0
25
28
12
42
22
22
22
2
9
50
30
0
3
3.667
4.083
3.399
3.197
8.014
0.476
80
478
100
12
28
1.585
9
3
22
6
4482
2235
1.818
3
-100
17
53
57
23
40
36
36
37
11
29
56
43
0
26
27
5
18
21
21
21
2
9
78
52
0
3.4
3.5
3.5
3.333
2.714
9.03
0.234
80
537
100
22
27
1.766
17
5
21
6
4556
2129
1.818
3
-100
18
53
57
27
47
37
37
38
11
28
65
30
0
25
26
6
23
21
21
21
2
9
73
42
0
4
4
3.6
3.728
3.273
8.595
0.252
80
517
100
20
25
2
16
4
20
5
4592
2079
1.727
2.5
-100
19
40
46
26
56
34
34
36
10
27
42
21
0
25
27
7
25
22
22
22
2
9
58
31
0
2
2.4
2.857
3.028
2.817
7.367
0.241
120
600
100
9
17
1
6
3
12
5
5461
3194
1
2.5
-100
20
39
43
21
48
36
36
38
11
28
26
11
0
23
24
4
16
22
22
22
2
9
29
15
0
3
3.5
3.5
3.316
2.824
11.723
0.159
120
663
100
4
9
1.585
3
1
7
2
5108
2836
0.455
1
-100
Total number of rows:
16058
Table truncated, full table size
2605 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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