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GEO accession:
Sample GSM402868
Query DataSets for GSM402868
Status
Public on Oct 31, 2011
Title
Hemo vs. whole 2
Sample type
RNA
Channel 1
Source name
hemocyte
Organism
Anopheles gambiae
Characteristics
strain: G3
cell type: hemocytes
Extracted molecule
total RNA
Extraction protocol
Qiagen
Label
Cy5
Label protocol
Agilent
Channel 2
Source name
mosquito
Organism
Anopheles gambiae
Characteristics
strain: G3
tissue: whole adult female mosquito
Extracted molecule
total RNA
Extraction protocol
Qiagen
Label
Cy3
Label protocol
Agilent
Hybridization protocol
Agilent
Scan protocol
GenePix
Description
Agilent
Data processing
In PMID 19500340
Submission date
May 13, 2009
Last update date
Oct 31, 2011
Contact name
George Dimopoulos
E-mail(s)
[email protected]
Phone
443 28 70128
Organization name
Johns Hopkins School of Public Health
Department
Molecular Microbiology and Immunology
Street address
615 N. Wolfe Street
City
Baltimore
State/province
MD
ZIP/Postal code
21205
Country
USA
Platform ID
GPL8552
Series (1)
GSE33269
Genome-wide transcriptomic profiling of Anopheles gambiae hemocytes reveals pathogen-specific signatures upon bacterial challenge and Plasmodium berghei infection
Data table header descriptions
ID_REF
F635 Median
F635 Mean
F635 SD
F635 CV
B635
B635 Median
B635 Mean
B635 SD
B635 CV
% > B635+1SD
% > B635+2SD
F635 % Sat.
F532 Median
F532 Mean
F532 SD
F532 CV
B532
B532 Median
B532 Mean
B532 SD
B532 CV
% > B532+1SD
% > B532+2SD
F532 % Sat.
Ratio of Medians (635/532)
VALUE
value
Median of Ratios (635/532)
Mean of Ratios (635/532)
Ratios SD (635/532)
Rgn Ratio (635/532)
Rgn R2 (635/532)
F Pixels
B Pixels
Circularity
Sum of Medians (635/532)
Sum of Means (635/532)
Log Ratio (635/532)
F635 Median - B635
F532 Median - B532
F635 Mean - B635
F532 Mean - B532
F635 Total Intensity
F532 Total Intensity
SNR 635
SNR 532
Flags
Data table
ID_REF
F635 Median
F635 Mean
F635 SD
F635 CV
B635
B635 Median
B635 Mean
B635 SD
B635 CV
% > B635+1SD
% > B635+2SD
F635 % Sat.
F532 Median
F532 Mean
F532 SD
F532 CV
B532
B532 Median
B532 Mean
B532 SD
B532 CV
% > B532+1SD
% > B532+2SD
F532 % Sat.
Ratio of Medians (635/532)
VALUE
Median of Ratios (635/532)
Mean of Ratios (635/532)
Ratios SD (635/532)
Rgn Ratio (635/532)
Rgn R2 (635/532)
F Pixels
B Pixels
Circularity
Sum of Medians (635/532)
Sum of Means (635/532)
Log Ratio (635/532)
F635 Median - B635
F532 Median - B532
F635 Mean - B635
F532 Mean - B532
F635 Total Intensity
F532 Total Intensity
SNR 635
SNR 532
Flags
1
57
61
24
39
49
49
53
22
41
30
9
0
28
28
5
17
24
24
24
3
12
55
32
0
2
3
3.679
3.439
3.559
22.99
0.05
120
614
100
12
16
1
8
4
12
4
7314
3415
0.364
1.333
-100
2
53
55
23
41
51
51
54
21
38
19
5
0
32
33
7
21
23
23
24
3
12
82
65
0
0.222
0.4
1.744
1.839
4.114
97.057
0.001
120
592
100
11
14
-2.17
2
9
4
10
6643
3915
0.048
3
-100
3
193
191
60
31
53
53
55
21
38
96
94
0
519
504
133
26
23
23
24
3
12
100
100
0
0.282
0.287
0.279
0.267
1.625
0.272
0.76
120
611
100
636
619
-1.825
140
496
138
481
22872
60499
6.476
160
0
4
53
64
75
117
51
51
55
21
38
20
8
0
28
29
11
37
24
24
25
5
20
36
10
0
0.5
2.6
3.833
3.386
3.095
9.873
0.371
120
749
100
6
18
-1
2
4
13
5
7651
3495
0.429
0.8
-100
5
68
72
31
43
54
54
57
24
42
34
15
0
36
37
7
18
25
25
26
6
23
71
43
0
1.273
1.5
1.433
1.95
3.515
26.013
0.017
32
236
100
25
30
0.348
14
11
18
12
2313
1192
0.625
1.833
-100
6
55
60
23
38
53
53
56
22
39
23
7
0
34
34
6
17
24
24
25
4
16
80
56
0
0.2
0.7
2.366
1.961
3.506
54.065
0.005
120
636
100
12
17
-2.322
2
10
7
10
7255
4118
0.182
2.25
-100
7
55
58
22
37
51
51
54
22
40
24
5
0
26
27
4
14
23
23
24
3
12
49
25
0
1.333
1.75
4.333
4.307
3.345
123.606
0.002
120
663
100
7
11
0.415
4
3
7
4
6948
3201
0.182
1
-100
8
53
55
20
36
50
50
53
20
37
19
7
0
26
26
4
15
23
23
24
3
12
37
18
0
1
1.667
4.333
4.216
2.991
82.338
0.005
120
640
100
6
8
0
3
3
5
3
6644
3077
0.1
0.667
-100
9
53
59
23
38
51
51
55
21
38
21
10
0
33
33
5
15
24
24
24
4
16
81
51
0
0.222
0.889
2.167
1.638
4.076
30.829
0.014
80
510
100
11
17
-2.17
2
9
8
9
4722
2630
0.19
2.25
-100
10
56
58
21
36
51
51
54
20
37
21
6
0
27
27
4
14
23
23
24
3
12
56
30
0
1.25
1.75
3.944
3.414
3.057
48.513
0.01
120
663
100
9
11
0.322
5
4
7
4
6951
3279
0.2
1
-100
11
71
69
28
40
54
54
56
22
39
38
9
0
35
35
5
14
23
23
24
4
16
94
78
0
1.417
1.25
2.333
2.127
2.63
23.813
0.021
52
328
100
29
27
0.503
17
12
15
12
3570
1817
0.591
2.75
-100
12
51
55
20
36
53
53
64
151
235
0
0
0
26
26
4
15
23
23
26
59
226
0
0
0
-0.667
0.667
3.429
3.614
2.91
856.801
0
120
767
100
1
5
Error
-2
3
2
3
6624
3136
-0.06
0
-100
13
55
57
23
40
50
50
53
21
39
24
8
0
25
26
4
15
23
23
24
4
16
29
10
0
2.5
2.333
5
5.306
2.892
55.323
0.009
120
640
100
7
10
1.322
5
2
7
3
6883
3129
0.19
0.5
-100
14
57
58
23
39
50
50
53
21
39
27
8
0
28
28
4
14
23
23
24
4
16
51
20
0
1.4
1.6
3
3.092
3.449
51.022
0.01
120
628
100
12
13
0.485
7
5
8
5
6992
3333
0.238
1
-100
15
53
56
22
39
50
50
53
21
39
22
6
0
33
33
6
18
23
23
24
3
12
80
66
0
0.3
0.6
1.854
1.563
4.2
363.075
0
120
596
100
13
16
-1.737
3
10
6
10
6774
3913
0.143
3
-100
16
52
55
20
36
50
50
53
22
41
19
5
0
26
27
6
22
24
24
24
3
12
39
9
0
1
1.667
4
4.085
3.073
41.766
0.013
120
704
100
4
8
0
2
2
5
3
6566
3213
0.091
1
-100
17
62
65
25
38
53
53
55
22
40
33
10
0
36
36
8
22
24
24
25
3
12
94
84
0
0.75
1
2
1.757
3.263
19.44
0.023
120
638
100
21
24
-0.415
9
12
12
12
7754
4354
0.455
3.667
-100
18
63
94
128
136
54
54
57
22
38
30
15
0
35
39
17
43
24
24
24
3
12
87
77
0
0.818
2.667
1.909
1.683
3.434
9.773
0.352
120
744
100
20
55
-0.29
9
11
40
15
11242
4715
1.682
5
-100
19
59
60
23
38
51
51
54
21
38
30
11
0
30
29
4
13
23
23
24
4
16
59
28
0
1.143
1.5
3.75
3.179
3.85
15.038
0.072
52
372
100
15
15
0.193
8
7
9
6
3108
1509
0.286
1.25
-100
20
56
60
23
38
52
52
55
20
36
30
6
0
29
29
4
13
24
24
24
3
12
65
39
0
0.8
1.6
3.714
3.989
3.097
95.249
0.003
120
627
100
9
13
-0.322
4
5
8
5
7201
3539
0.25
1.667
-100
Total number of rows:
16058
Table truncated, full table size
2681 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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