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Sample GSM402874 Query DataSets for GSM402874
Status Public on Oct 31, 2011
Title Hemo m luteus vs. hemo unchallenged C
Sample type RNA
 
Channel 1
Source name Hemo m luteus
Organism Anopheles gambiae
Characteristics strain: G3
cell type: hemocytes
treatment: M. luteus
Extracted molecule total RNA
Extraction protocol Qiagen
Label Cy5
Label protocol Agilent
 
Channel 2
Source name hemo unchallenged
Organism Anopheles gambiae
Characteristics strain: G3
cell type: hemocytes
treatment: unchallenged
Extracted molecule total RNA
Extraction protocol Qiagen
Label Cy3
Label protocol Agilent
 
 
Hybridization protocol Agilent
Scan protocol GenePix
Description Agilent
Data processing In PMID 19500340
 
Submission date May 13, 2009
Last update date Oct 31, 2011
Contact name George Dimopoulos
E-mail(s) [email protected]
Phone 443 28 70128
Organization name Johns Hopkins School of Public Health
Department Molecular Microbiology and Immunology
Street address 615 N. Wolfe Street
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
 
Platform ID GPL8550
Series (1)
GSE33269 Genome-wide transcriptomic profiling of Anopheles gambiae hemocytes reveals pathogen-specific signatures upon bacterial challenge and Plasmodium berghei infection

Data table header descriptions
ID_REF
F635 Median
F635 Mean
F635 SD
F635 CV
B635
B635 Median
B635 Mean
B635 SD
B635 CV
% > B635+1SD
% > B635+2SD
F635 % Sat.
F532 Median
F532 Mean
F532 SD
F532 CV
B532
B532 Median
B532 Mean
B532 SD
B532 CV
% > B532+1SD
% > B532+2SD
F532 % Sat.
Ratio of Medians (635/532)
VALUE value
Median of Ratios (635/532)
Mean of Ratios (635/532)
Ratios SD (635/532)
Rgn Ratio (635/532)
Rgn R2 (635/532)
F Pixels
B Pixels
Circularity
Sum of Medians (635/532)
Sum of Means (635/532)
Log Ratio (635/532)
F635 Median - B635
F532 Median - B532
F635 Mean - B635
F532 Mean - B532
F635 Total Intensity
F532 Total Intensity
SNR 635
SNR 532
Flags

Data table
ID_REF F635 Median F635 Mean F635 SD F635 CV B635 B635 Median B635 Mean B635 SD B635 CV % > B635+1SD % > B635+2SD F635 % Sat. F532 Median F532 Mean F532 SD F532 CV B532 B532 Median B532 Mean B532 SD B532 CV % > B532+1SD % > B532+2SD F532 % Sat. Ratio of Medians (635/532) VALUE Median of Ratios (635/532) Mean of Ratios (635/532) Ratios SD (635/532) Rgn Ratio (635/532) Rgn R2 (635/532) F Pixels B Pixels Circularity Sum of Medians (635/532) Sum of Means (635/532) Log Ratio (635/532) F635 Median - B635 F532 Median - B532 F635 Mean - B635 F532 Mean - B532 F635 Total Intensity F532 Total Intensity SNR 635 SNR 532 Flags
1 37 42 20 47 32 32 36 15 41 27 10 0 39 40 13 32 28 28 29 8 27 55 36 0 0.455 0.833 1.056 1.057 3.403 4.824 0.039 120 566 100 16 22 -1.136 5 11 10 12 4992 4834 0.4 1.375 -100
2 36 38 15 39 31 31 35 14 40 28 5 0 37 38 11 28 29 29 30 8 26 47 25 0 0.625 0.778 1.191 1.147 3.106 23.523 0.001 120 612 100 13 16 -0.678 5 8 7 9 4548 4523 0.214 1 -100
3 34 41 22 53 32 32 34 12 35 30 17 0 36 40 15 37 27 27 28 8 28 52 31 0 0.222 0.692 0.886 0.873 3.949 2.786 0.072 120 576 100 11 22 -2.171 2 9 9 13 4907 4765 0.583 1.5 -100
4 39 42 18 42 29 29 33 13 39 42 20 0 41 44 22 50 27 27 28 7 25 69 48 0 0.714 0.765 1 1.051 3.699 1.115 0.033 120 599 100 24 30 -0.486 10 14 13 17 5031 5327 0.692 2.286 -100
5 74 191 398 208 32 32 35 14 40 74 60 0 56 91 151 165 28 28 29 8 27 87 75 0 1.5 2.524 1.672 1.654 2.662 2.847 0.791 120 611 100 70 222 0.585 42 28 159 63 22943 10897 11.143 7.75 -100
6 37 40 18 45 32 32 35 13 37 31 15 0 39 39 11 28 28 28 33 50 151 0 0 0 0.455 0.727 1.5 1.322 2.741 5.163 0.018 120 620 100 16 19 -1.136 5 11 8 11 4773 4738 0.385 0.12 -100
7 38 44 28 63 29 29 33 13 39 42 21 0 40 41 16 39 27 27 28 8 28 61 39 0 0.692 1.071 1.152 1.108 3.677 3.696 0.068 120 536 100 22 29 -0.531 9 13 15 14 5300 4973 0.846 1.625 -100
8 37 43 39 90 31 31 35 14 40 33 11 0 34 38 14 36 28 28 30 9 30 41 22 0 1 1.2 1.227 1.175 3.701 6.87 0.062 120 683 100 12 22 0 6 6 12 10 5172 4525 0.571 0.889 -100
9 35 39 16 41 31 31 34 13 38 31 13 0 39 40 12 30 26 26 28 7 25 63 43 0 0.308 0.571 1.089 1.083 3.992 4.576 0.022 120 597 100 17 22 -1.699 4 13 8 14 4655 4796 0.385 1.714 -100
10 37 38 16 42 31 31 34 13 38 30 13 0 35 37 11 29 28 28 30 8 26 43 19 0 0.857 0.778 1.438 1.302 3.753 11.085 0.006 120 588 100 13 16 -0.223 6 7 7 9 4593 4401 0.308 0.875 -100
11 34 37 15 40 32 32 35 13 37 26 7 0 35 36 11 30 29 29 30 8 26 39 17 0 0.333 0.714 1.387 1.226 3.45 -231.874 0 120 584 100 8 12 -1.586 2 6 5 7 4498 4321 0.154 0.75 -100
12 63 70 40 57 32 32 36 14 38 75 55 0 48 49 16 32 26 26 28 8 28 79 61 0 1.409 1.652 1.63 1.517 3.434 3.709 0.194 120 583 100 53 61 0.495 31 22 38 23 8365 5855 2.429 2.625 -100
13 34 39 17 43 31 31 35 13 37 31 15 0 38 41 11 26 28 28 30 8 26 58 30 0 0.3 0.615 1.2 1.127 4.304 11.067 0.003 120 586 100 13 21 -1.737 3 10 8 13 4709 4875 0.308 1.375 -100
14 37 39 14 35 32 32 35 14 40 26 9 0 43 46 14 30 27 27 28 7 25 75 54 0 0.313 0.368 0.837 0.806 3.356 2.57 0.014 120 658 100 21 26 -1.676 5 16 7 19 4703 5462 0.286 2.571 -100
15 56 80 75 93 35 35 72 243 337 4 0 0 56 63 31 49 27 27 38 74 194 10 1 0 0.724 1.25 0.895 0.839 3.283 4.201 0.311 120 709 100 50 81 -0.466 21 29 45 36 9544 7577 0.033 0.338 -100
16 37 40 17 42 31 31 35 14 40 30 15 0 37 39 13 33 28 28 30 8 26 51 27 0 0.667 0.818 1.667 1.27 3.714 6.451 0.011 120 616 100 15 20 -0.584 6 9 9 11 4843 4720 0.357 1.125 -100
17 49 58 32 55 30 30 34 13 38 56 39 0 48 50 19 38 27 27 28 7 25 82 63 0 0.905 1.217 1.298 1.068 3.427 2.505 0.179 120 614 100 40 51 -0.144 19 21 28 23 6996 5944 1.846 3.143 -100
18 36 40 16 40 31 31 34 14 41 34 14 0 40 40 14 35 27 27 28 7 25 63 42 0 0.385 0.692 0.863 0.974 3.188 7.819 0.005 120 655 100 18 22 -1.377 5 13 9 13 4808 4769 0.429 1.714 -100
19 41 49 22 44 33 33 35 13 37 41 27 0 45 46 14 30 28 28 30 8 26 72 50 0 0.471 0.889 1.136 0.89 3.803 3.356 0.059 120 614 100 25 34 -1.086 8 17 16 18 5860 5533 1.077 2 -100
20 37 41 18 43 32 32 36 15 41 26 9 0 39 42 14 33 27 27 29 8 27 62 37 0 0.417 0.6 1.143 0.981 3.586 4.197 0.026 120 643 100 17 24 -1.262 5 12 9 15 4891 5054 0.333 1.625 -100

Total number of rows: 21342

Table truncated, full table size 3718 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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