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GEO accession:
Sample GSM402874
Query DataSets for GSM402874
Status
Public on Oct 31, 2011
Title
Hemo m luteus vs. hemo unchallenged C
Sample type
RNA
Channel 1
Source name
Hemo m luteus
Organism
Anopheles gambiae
Characteristics
strain: G3
cell type: hemocytes
treatment: M. luteus
Extracted molecule
total RNA
Extraction protocol
Qiagen
Label
Cy5
Label protocol
Agilent
Channel 2
Source name
hemo unchallenged
Organism
Anopheles gambiae
Characteristics
strain: G3
cell type: hemocytes
treatment: unchallenged
Extracted molecule
total RNA
Extraction protocol
Qiagen
Label
Cy3
Label protocol
Agilent
Hybridization protocol
Agilent
Scan protocol
GenePix
Description
Agilent
Data processing
In PMID 19500340
Submission date
May 13, 2009
Last update date
Oct 31, 2011
Contact name
George Dimopoulos
E-mail(s)
[email protected]
Phone
443 28 70128
Organization name
Johns Hopkins School of Public Health
Department
Molecular Microbiology and Immunology
Street address
615 N. Wolfe Street
City
Baltimore
State/province
MD
ZIP/Postal code
21205
Country
USA
Platform ID
GPL8550
Series (1)
GSE33269
Genome-wide transcriptomic profiling of Anopheles gambiae hemocytes reveals pathogen-specific signatures upon bacterial challenge and Plasmodium berghei infection
Data table header descriptions
ID_REF
F635 Median
F635 Mean
F635 SD
F635 CV
B635
B635 Median
B635 Mean
B635 SD
B635 CV
% > B635+1SD
% > B635+2SD
F635 % Sat.
F532 Median
F532 Mean
F532 SD
F532 CV
B532
B532 Median
B532 Mean
B532 SD
B532 CV
% > B532+1SD
% > B532+2SD
F532 % Sat.
Ratio of Medians (635/532)
VALUE
value
Median of Ratios (635/532)
Mean of Ratios (635/532)
Ratios SD (635/532)
Rgn Ratio (635/532)
Rgn R2 (635/532)
F Pixels
B Pixels
Circularity
Sum of Medians (635/532)
Sum of Means (635/532)
Log Ratio (635/532)
F635 Median - B635
F532 Median - B532
F635 Mean - B635
F532 Mean - B532
F635 Total Intensity
F532 Total Intensity
SNR 635
SNR 532
Flags
Data table
ID_REF
F635 Median
F635 Mean
F635 SD
F635 CV
B635
B635 Median
B635 Mean
B635 SD
B635 CV
% > B635+1SD
% > B635+2SD
F635 % Sat.
F532 Median
F532 Mean
F532 SD
F532 CV
B532
B532 Median
B532 Mean
B532 SD
B532 CV
% > B532+1SD
% > B532+2SD
F532 % Sat.
Ratio of Medians (635/532)
VALUE
Median of Ratios (635/532)
Mean of Ratios (635/532)
Ratios SD (635/532)
Rgn Ratio (635/532)
Rgn R2 (635/532)
F Pixels
B Pixels
Circularity
Sum of Medians (635/532)
Sum of Means (635/532)
Log Ratio (635/532)
F635 Median - B635
F532 Median - B532
F635 Mean - B635
F532 Mean - B532
F635 Total Intensity
F532 Total Intensity
SNR 635
SNR 532
Flags
1
37
42
20
47
32
32
36
15
41
27
10
0
39
40
13
32
28
28
29
8
27
55
36
0
0.455
0.833
1.056
1.057
3.403
4.824
0.039
120
566
100
16
22
-1.136
5
11
10
12
4992
4834
0.4
1.375
-100
2
36
38
15
39
31
31
35
14
40
28
5
0
37
38
11
28
29
29
30
8
26
47
25
0
0.625
0.778
1.191
1.147
3.106
23.523
0.001
120
612
100
13
16
-0.678
5
8
7
9
4548
4523
0.214
1
-100
3
34
41
22
53
32
32
34
12
35
30
17
0
36
40
15
37
27
27
28
8
28
52
31
0
0.222
0.692
0.886
0.873
3.949
2.786
0.072
120
576
100
11
22
-2.171
2
9
9
13
4907
4765
0.583
1.5
-100
4
39
42
18
42
29
29
33
13
39
42
20
0
41
44
22
50
27
27
28
7
25
69
48
0
0.714
0.765
1
1.051
3.699
1.115
0.033
120
599
100
24
30
-0.486
10
14
13
17
5031
5327
0.692
2.286
-100
5
74
191
398
208
32
32
35
14
40
74
60
0
56
91
151
165
28
28
29
8
27
87
75
0
1.5
2.524
1.672
1.654
2.662
2.847
0.791
120
611
100
70
222
0.585
42
28
159
63
22943
10897
11.143
7.75
-100
6
37
40
18
45
32
32
35
13
37
31
15
0
39
39
11
28
28
28
33
50
151
0
0
0
0.455
0.727
1.5
1.322
2.741
5.163
0.018
120
620
100
16
19
-1.136
5
11
8
11
4773
4738
0.385
0.12
-100
7
38
44
28
63
29
29
33
13
39
42
21
0
40
41
16
39
27
27
28
8
28
61
39
0
0.692
1.071
1.152
1.108
3.677
3.696
0.068
120
536
100
22
29
-0.531
9
13
15
14
5300
4973
0.846
1.625
-100
8
37
43
39
90
31
31
35
14
40
33
11
0
34
38
14
36
28
28
30
9
30
41
22
0
1
1.2
1.227
1.175
3.701
6.87
0.062
120
683
100
12
22
0
6
6
12
10
5172
4525
0.571
0.889
-100
9
35
39
16
41
31
31
34
13
38
31
13
0
39
40
12
30
26
26
28
7
25
63
43
0
0.308
0.571
1.089
1.083
3.992
4.576
0.022
120
597
100
17
22
-1.699
4
13
8
14
4655
4796
0.385
1.714
-100
10
37
38
16
42
31
31
34
13
38
30
13
0
35
37
11
29
28
28
30
8
26
43
19
0
0.857
0.778
1.438
1.302
3.753
11.085
0.006
120
588
100
13
16
-0.223
6
7
7
9
4593
4401
0.308
0.875
-100
11
34
37
15
40
32
32
35
13
37
26
7
0
35
36
11
30
29
29
30
8
26
39
17
0
0.333
0.714
1.387
1.226
3.45
-231.874
0
120
584
100
8
12
-1.586
2
6
5
7
4498
4321
0.154
0.75
-100
12
63
70
40
57
32
32
36
14
38
75
55
0
48
49
16
32
26
26
28
8
28
79
61
0
1.409
1.652
1.63
1.517
3.434
3.709
0.194
120
583
100
53
61
0.495
31
22
38
23
8365
5855
2.429
2.625
-100
13
34
39
17
43
31
31
35
13
37
31
15
0
38
41
11
26
28
28
30
8
26
58
30
0
0.3
0.615
1.2
1.127
4.304
11.067
0.003
120
586
100
13
21
-1.737
3
10
8
13
4709
4875
0.308
1.375
-100
14
37
39
14
35
32
32
35
14
40
26
9
0
43
46
14
30
27
27
28
7
25
75
54
0
0.313
0.368
0.837
0.806
3.356
2.57
0.014
120
658
100
21
26
-1.676
5
16
7
19
4703
5462
0.286
2.571
-100
15
56
80
75
93
35
35
72
243
337
4
0
0
56
63
31
49
27
27
38
74
194
10
1
0
0.724
1.25
0.895
0.839
3.283
4.201
0.311
120
709
100
50
81
-0.466
21
29
45
36
9544
7577
0.033
0.338
-100
16
37
40
17
42
31
31
35
14
40
30
15
0
37
39
13
33
28
28
30
8
26
51
27
0
0.667
0.818
1.667
1.27
3.714
6.451
0.011
120
616
100
15
20
-0.584
6
9
9
11
4843
4720
0.357
1.125
-100
17
49
58
32
55
30
30
34
13
38
56
39
0
48
50
19
38
27
27
28
7
25
82
63
0
0.905
1.217
1.298
1.068
3.427
2.505
0.179
120
614
100
40
51
-0.144
19
21
28
23
6996
5944
1.846
3.143
-100
18
36
40
16
40
31
31
34
14
41
34
14
0
40
40
14
35
27
27
28
7
25
63
42
0
0.385
0.692
0.863
0.974
3.188
7.819
0.005
120
655
100
18
22
-1.377
5
13
9
13
4808
4769
0.429
1.714
-100
19
41
49
22
44
33
33
35
13
37
41
27
0
45
46
14
30
28
28
30
8
26
72
50
0
0.471
0.889
1.136
0.89
3.803
3.356
0.059
120
614
100
25
34
-1.086
8
17
16
18
5860
5533
1.077
2
-100
20
37
41
18
43
32
32
36
15
41
26
9
0
39
42
14
33
27
27
29
8
27
62
37
0
0.417
0.6
1.143
0.981
3.586
4.197
0.026
120
643
100
17
24
-1.262
5
12
9
15
4891
5054
0.333
1.625
-100
Total number of rows:
21342
Table truncated, full table size
3718 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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